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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 133ChIP-seq
  • 31total RNA-seq
  • 28single cell RNA-seq
  • 11WGBS
  • 8ATAC-seq
Assay category
  • 133DNA binding
  • 59Transcription
  • 11DNA methylation
  • 8DNA accessibility
Target of assay
  • 104transcription factor
  • 26control
  • 18RNA binding protein
  • 3chromatin remodeller
Date released
  • 39November, 2017
  • 32December, 2018
  • 27October, 2018
  • 18September, 2020
  • 17April, 2018
  • 17November, 2018
  • 15February, 2018
  • 13August, 2017
  • 8January, 2019
  • 8July, 2018
  • 6February, 2021
  • 6October, 2017
  • 4December, 2017
  • 1June, 2018
Available data
  • 209fastq
  • 185bam
  • 159bigWig
  • 108bed narrowPeak
  • 102bigBed narrowPeak
  • 47tsv
  • 3bed bedMethyl
  • 3bigBed bedMethyl
  • 2bed bed3+
  • 2zippedFastqFolder
Organism
  • 211Homo sapiens
Biosample type
  • 88cell line
  • 58tissue
  • 50primary cell
  • 15in vitro differentiated cells
Organ
  • 58pancreas
  • 49liver
  • 45blood
  • 45bodily fluid
  • 40epithelium
  • 26adipose tissue
  • 26connective tissue
  • 8spleen
  • 4embryo
Project
  • 187AMP
  • 24HPAP
Genome assembly (visualization)
  • 159GRCh38
  • 156hg19
Lab
  • 187AMP-T2D consortium
  • 24Klaus Kaestner, Upenn
  • Kyle Gaulton, UCSD
Audit category:
  • 7missing controlled_by
lab.title!
  • Kyle Gaulton, UCSD
BIOSAMPLE
ASSAY

211 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
WGBS
ATAC-seq
cell line
GM1287845
HepG243
tissue
body of pancreas134
subcutaneous adipose tissue81
spleen71
omental fat pad61
white adipose tissue7
primary cell
pancreatic alpha cell1546
pancreatic beta cell14
mesenchymal cell4
pancreatic cell4
pancreatic delta cell3
in vitro differentiated cells
pancreatic endoderm4
definitive endodermal cell2
embryonic stem cell2
endocrine cell2
posterior foregut2
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