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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
133
ChIP-seq
37
total RNA-seq
26
ATAC-seq
11
WGBS
11
single cell RNA-seq
Assay category
133
DNA binding
48
Transcription
26
DNA accessibility
11
DNA methylation
Target of assay
104
transcription factor
26
control
18
RNA binding protein
3
chromatin remodeller
Date released
39
November, 2017
32
December, 2018
27
October, 2018
24
May, 2022
18
September, 2020
April, 2018
17
November, 2018
15
February, 2018
13
August, 2017
8
January, 2019
8
July, 2018
6
February, 2021
6
October, 2017
4
December, 2017
1
June, 2018
Available data
216
fastq
192
bam
142
bigWig
126
bed narrowPeak
102
bigBed narrowPeak
30
tsv
6
txt
3
bed bedMethyl
3
bigBed bedMethyl
2
bed bed3+
2
zippedFastqFolder
Organism
218
Homo sapiens
Biosample type
88
cell line
82
tissue
33
primary cell
15
in vitro differentiated cells
Organ
71
pancreas
49
liver
45
blood
45
bodily fluid
29
epithelium
26
adipose tissue
26
connective tissue
8
spleen
4
embryo
Project
194
AMP
24
HPAP
Genome assembly (visualization)
157
hg19
142
GRCh38
Lab
170
AMP-T2D consortium
24
Klaus Kaestner, Upenn
24
Kyle Gaulton, UCSD
Audit category:
7
missing controlled_by
month_released!
April, 2018
BIOSAMPLE
ASSAY
218 results
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ChIP-seq
total RNA-seq
ATAC-seq
WGBS
single cell RNA-seq
cell line
GM12878
45
HepG2
43
tissue
islet of Langerhans
6
18
body of pancreas
13
4
subcutaneous adipose tissue
8
1
spleen
7
1
omental fat pad
6
1
+ See 5 more…
primary cell
pancreatic alpha cell
15
6
2
pancreatic beta cell
1
2
Langerhans cell
2
pancreatic cell
2
pancreatic acinar cell
1
+ See 2 more…
in vitro differentiated cells
pancreatic endoderm
4
definitive endodermal cell
2
embryonic stem cell
2
endocrine cell
2
posterior foregut
2
+ See 2 more…
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