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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
94
ChIP-seq
37
total RNA-seq
28
single cell RNA-seq
26
ATAC-seq
11
WGBS
Assay category
94
DNA binding
65
Transcription
26
DNA accessibility
11
DNA methylation
Target of assay
70
transcription factor
22
control
14
RNA binding protein
1
chromatin remodeller
Date released
November, 2017
32
December, 2018
27
October, 2018
24
May, 2022
18
September, 2020
17
April, 2018
17
November, 2018
15
February, 2018
13
August, 2017
8
January, 2019
8
July, 2018
6
February, 2021
6
October, 2017
4
December, 2017
1
June, 2018
Available data
194
fastq
170
bam
124
bigWig
91
bed narrowPeak
67
bigBed narrowPeak
47
tsv
6
txt
3
bed bedMethyl
3
bigBed bedMethyl
2
bed bed3+
2
zippedFastqFolder
Organism
196
Homo sapiens
Biosample type
82
tissue
50
primary cell
49
cell line
15
in vitro differentiated cells
Organ
82
pancreas
45
blood
45
bodily fluid
40
epithelium
26
adipose tissue
26
connective tissue
10
liver
8
spleen
4
embryo
Project
172
AMP
24
HPAP
Genome assembly (visualization)
139
hg19
124
GRCh38
Lab
148
AMP-T2D consortium
24
Klaus Kaestner, Upenn
24
Kyle Gaulton, UCSD
Audit category:
7
missing controlled_by
month_released!
November, 2017
BIOSAMPLE
ASSAY
196 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
WGBS
tissue
islet of Langerhans
6
18
body of pancreas
13
4
subcutaneous adipose tissue
8
1
spleen
7
1
omental fat pad
6
1
+ See 5 more…
primary cell
pancreatic alpha cell
15
4
6
pancreatic beta cell
1
4
mesenchymal cell
4
pancreatic cell
4
pancreatic delta cell
3
+ See 4 more…
cell line
GM12878
45
HepG2
4
in vitro differentiated cells
pancreatic endoderm
4
definitive endodermal cell
2
embryonic stem cell
2
endocrine cell
2
posterior foregut
2
+ See 2 more…
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