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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
94
ChIP-seq
37
total RNA-seq
28
single cell RNA-seq
26
ATAC-seq
5
WGBS
Assay category
94
DNA binding
65
Transcription
26
DNA accessibility
5
DNA methylation
Target of assay
70
transcription factor
22
control
14
RNA binding protein
1
chromatin remodeller
Date released
November, 2017
32
December, 2018
27
October, 2018
24
May, 2022
18
September, 2020
17
April, 2018
17
November, 2018
15
February, 2018
13
August, 2017
8
January, 2019
8
July, 2018
6
October, 2017
4
December, 2017
1
June, 2018
Available data
188
fastq
170
bam
124
bigWig
91
bed narrowPeak
67
bigBed narrowPeak
41
tsv
6
txt
3
bed bedMethyl
3
bigBed bedMethyl
2
bed bed3+
2
zippedFastqFolder
Organism
190
Homo sapiens
Biosample type
82
tissue
49
cell line
44
primary cell
15
in vitro differentiated cells
Organ
76
pancreas
45
blood
45
bodily fluid
34
epithelium
26
adipose tissue
26
connective tissue
10
liver
8
spleen
4
embryo
Project
172
AMP
18
HPAP
Genome assembly (visualization)
139
hg19
124
GRCh38
Lab
148
AMP-T2D consortium
24
Kyle Gaulton, UCSD
18
Klaus Kaestner, Upenn
Audit category:
7
missing controlled_by
month_released!
November, 2017
BIOSAMPLE
ASSAY
190 results
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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
WGBS
tissue
islet of Langerhans
6
18
body of pancreas
13
4
subcutaneous adipose tissue
8
1
spleen
7
1
omental fat pad
6
1
+ See 5 more…
cell line
GM12878
45
HepG2
4
primary cell
pancreatic alpha cell
15
4
pancreatic beta cell
1
4
mesenchymal cell
4
pancreatic cell
4
pancreatic delta cell
3
+ See 4 more…
in vitro differentiated cells
pancreatic endoderm
4
definitive endodermal cell
2
embryonic stem cell
2
endocrine cell
2
posterior foregut
2
+ See 2 more…
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