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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
117
ChIP-seq
37
total RNA-seq
28
single cell RNA-seq
26
ATAC-seq
10
WGBS
Assay category
117
DNA binding
65
Transcription
26
DNA accessibility
10
DNA methylation
Target of assay
90
transcription factor
24
control
17
RNA binding protein
3
chromatin remodeller
Date released
39
November, 2017
32
December, 2018
27
October, 2018
24
May, 2022
18
September, 2020
17
April, 2018
November, 2018
15
February, 2018
13
August, 2017
8
January, 2019
8
July, 2018
6
February, 2021
6
October, 2017
4
December, 2017
1
June, 2018
Available data
216
fastq
192
bam
144
bigWig
112
bed narrowPeak
88
bigBed narrowPeak
47
tsv
6
txt
2
bed bed3+
2
bed bedMethyl
2
bigBed bedMethyl
2
zippedFastqFolder
Organism
218
Homo sapiens
Biosample type
81
tissue
72
cell line
50
primary cell
15
in vitro differentiated cells
Organ
81
pancreas
45
liver
40
epithelium
33
blood
33
bodily fluid
26
adipose tissue
26
connective tissue
8
spleen
4
embryo
Project
194
AMP
24
HPAP
Genome assembly (visualization)
160
hg19
144
GRCh38
Lab
170
AMP-T2D consortium
24
Klaus Kaestner, Upenn
24
Kyle Gaulton, UCSD
Audit category:
7
missing controlled_by
month_released!
November, 2018
BIOSAMPLE
ASSAY
218 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
WGBS
tissue
islet of Langerhans
6
18
body of pancreas
13
4
subcutaneous adipose tissue
8
1
spleen
7
1
omental fat pad
6
1
+ See 4 more…
cell line
HepG2
39
GM12878
33
primary cell
pancreatic alpha cell
15
4
6
pancreatic beta cell
1
4
mesenchymal cell
4
pancreatic cell
4
pancreatic delta cell
3
+ See 4 more…
in vitro differentiated cells
pancreatic endoderm
4
definitive endodermal cell
2
embryonic stem cell
2
endocrine cell
2
posterior foregut
2
+ See 2 more…
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