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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 117ChIP-seq
  • 37total RNA-seq
  • 28single cell RNA-seq
  • 26ATAC-seq
  • 10WGBS
Assay category
  • 117DNA binding
  • 65Transcription
  • 26DNA accessibility
  • 10DNA methylation
Target of assay
  • 90transcription factor
  • 24control
  • 17RNA binding protein
  • 3chromatin remodeller
Date released
  • 39November, 2017
  • 32December, 2018
  • 27October, 2018
  • 24May, 2022
  • 18September, 2020
  • 17April, 2018
  • November, 2018
  • 15February, 2018
  • 13August, 2017
  • 8January, 2019
  • 8July, 2018
  • 6February, 2021
  • 6October, 2017
  • 4December, 2017
  • 1June, 2018
Available data
  • 216fastq
  • 192bam
  • 144bigWig
  • 112bed narrowPeak
  • 88bigBed narrowPeak
  • 47tsv
  • 6txt
  • 2bed bed3+
  • 2bed bedMethyl
  • 2bigBed bedMethyl
  • 2zippedFastqFolder
Organism
  • 218Homo sapiens
Biosample type
  • 81tissue
  • 72cell line
  • 50primary cell
  • 15in vitro differentiated cells
Organ
  • 81pancreas
  • 45liver
  • 40epithelium
  • 33blood
  • 33bodily fluid
  • 26adipose tissue
  • 26connective tissue
  • 8spleen
  • 4embryo
Project
  • 194AMP
  • 24HPAP
Genome assembly (visualization)
  • 160hg19
  • 144GRCh38
Lab
  • 170AMP-T2D consortium
  • 24Klaus Kaestner, Upenn
  • 24Kyle Gaulton, UCSD
Audit category:
  • 7missing controlled_by
month_released!
  • November, 2018
BIOSAMPLE
ASSAY

218 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
WGBS
tissue
islet of Langerhans618
body of pancreas134
subcutaneous adipose tissue81
spleen71
omental fat pad61
cell line
HepG239
GM1287833
primary cell
pancreatic alpha cell1546
pancreatic beta cell14
mesenchymal cell4
pancreatic cell4
pancreatic delta cell3
in vitro differentiated cells
pancreatic endoderm4
definitive endodermal cell2
embryonic stem cell2
endocrine cell2
posterior foregut2
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