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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
133
ChIP-seq
37
total RNA-seq
28
single cell RNA-seq
20
ATAC-seq
11
WGBS
Assay category
133
DNA binding
65
Transcription
20
DNA accessibility
11
DNA methylation
Target of assay
104
transcription factor
26
control
18
RNA binding protein
3
chromatin remodeller
Date released
39
November, 2017
32
December, 2018
27
October, 2018
24
May, 2022
18
September, 2020
17
April, 2018
17
November, 2018
15
February, 2018
13
August, 2017
8
January, 2019
8
July, 2018
6
February, 2021
October, 2017
4
December, 2017
1
June, 2018
Available data
227
fastq
203
bam
153
bigWig
120
bed narrowPeak
102
bigBed narrowPeak
47
tsv
6
txt
3
bed bedMethyl
3
bigBed bedMethyl
2
bed bed3+
2
zippedFastqFolder
Organism
229
Homo sapiens
Biosample type
88
cell line
76
tissue
50
primary cell
15
in vitro differentiated cells
Organ
78
pancreas
49
liver
45
blood
45
bodily fluid
40
epithelium
25
adipose tissue
25
connective tissue
7
spleen
4
embryo
Project
205
AMP
24
HPAP
Genome assembly (visualization)
168
hg19
153
GRCh38
Lab
181
AMP-T2D consortium
24
Klaus Kaestner, Upenn
24
Kyle Gaulton, UCSD
Audit category:
7
missing controlled_by
month_released!
October, 2017
BIOSAMPLE
ASSAY
229 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
WGBS
cell line
GM12878
45
HepG2
43
tissue
islet of Langerhans
6
18
body of pancreas
13
subcutaneous adipose tissue
8
1
spleen
7
white adipose tissue
7
+ See 5 more…
primary cell
pancreatic alpha cell
15
4
6
pancreatic beta cell
1
4
mesenchymal cell
4
pancreatic cell
4
pancreatic delta cell
3
+ See 4 more…
in vitro differentiated cells
pancreatic endoderm
4
definitive endodermal cell
2
embryonic stem cell
2
endocrine cell
2
posterior foregut
2
+ See 2 more…
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