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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 106ChIP-seq
  • 37total RNA-seq
  • 28single cell RNA-seq
  • 26ATAC-seq
  • 11WGBS
Assay category
  • 106DNA binding
  • 65Transcription
  • 26DNA accessibility
  • 11DNA methylation
Target of assay
  • 91transcription factor
  • 12control
  • 9RNA binding protein
  • 3chromatin remodeller
Date released
  • 39November, 2017
  • 32December, 2018
  • October, 2018
  • 24May, 2022
  • 18September, 2020
  • 17April, 2018
  • 17November, 2018
  • 15February, 2018
  • 13August, 2017
  • 8January, 2019
  • 8July, 2018
  • 6February, 2021
  • 6October, 2017
  • 4December, 2017
  • 1June, 2018
Available data
  • 206fastq
  • 182bam
  • 146bigWig
  • 113bed narrowPeak
  • 89bigBed narrowPeak
  • 47tsv
  • 6txt
  • 3bed bedMethyl
  • 3bigBed bedMethyl
  • 2bed bed3+
  • 2zippedFastqFolder
Organism
  • 208Homo sapiens
Biosample type
  • 88cell line
  • 55tissue
  • 50primary cell
  • 15in vitro differentiated cells
Organ
  • 69pancreas
  • 49liver
  • 45blood
  • 45bodily fluid
  • 40epithelium
  • 12adipose tissue
  • 12connective tissue
  • 8spleen
  • 4embryo
Project
  • 184AMP
  • 24HPAP
Genome assembly (visualization)
  • 161hg19
  • 146GRCh38
Lab
  • 160AMP-T2D consortium
  • 24Klaus Kaestner, Upenn
  • 24Kyle Gaulton, UCSD
Audit category:
  • 7missing controlled_by
month_released!
  • October, 2018
BIOSAMPLE
ASSAY

208 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
WGBS
cell line
GM1287845
HepG243
tissue
islet of Langerhans618
spleen71
white adipose tissue7
right lobe of liver41
body of pancreas4
primary cell
pancreatic alpha cell1546
pancreatic beta cell14
mesenchymal cell4
pancreatic cell4
pancreatic delta cell3
in vitro differentiated cells
pancreatic endoderm4
definitive endodermal cell2
embryonic stem cell2
endocrine cell2
posterior foregut2
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