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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
ChIP-seq
37
total RNA-seq
28
single cell RNA-seq
26
ATAC-seq
11
WGBS
Assay category
106
DNA binding
65
Transcription
26
DNA accessibility
11
DNA methylation
Target of assay
91
transcription factor
12
control
9
RNA binding protein
3
chromatin remodeller
Date released
39
November, 2017
32
December, 2018
October, 2018
24
May, 2022
18
September, 2020
17
April, 2018
17
November, 2018
15
February, 2018
13
August, 2017
8
January, 2019
8
July, 2018
6
February, 2021
6
October, 2017
4
December, 2017
1
June, 2018
Available data
206
fastq
182
bam
146
bigWig
113
bed narrowPeak
89
bigBed narrowPeak
47
tsv
6
txt
3
bed bedMethyl
3
bigBed bedMethyl
2
bed bed3+
2
zippedFastqFolder
Organism
208
Homo sapiens
Biosample type
88
cell line
55
tissue
50
primary cell
15
in vitro differentiated cells
Organ
69
pancreas
49
liver
45
blood
45
bodily fluid
40
epithelium
12
adipose tissue
12
connective tissue
8
spleen
4
embryo
Project
184
AMP
24
HPAP
Genome assembly (visualization)
161
hg19
146
GRCh38
Lab
160
AMP-T2D consortium
24
Klaus Kaestner, Upenn
24
Kyle Gaulton, UCSD
Audit category:
7
missing controlled_by
month_released!
October, 2018
BIOSAMPLE
ASSAY
208 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
WGBS
cell line
GM12878
45
HepG2
43
tissue
islet of Langerhans
6
18
spleen
7
1
white adipose tissue
7
right lobe of liver
4
1
body of pancreas
4
+ See 5 more…
primary cell
pancreatic alpha cell
15
4
6
pancreatic beta cell
1
4
mesenchymal cell
4
pancreatic cell
4
pancreatic delta cell
3
+ See 4 more…
in vitro differentiated cells
pancreatic endoderm
4
definitive endodermal cell
2
embryonic stem cell
2
endocrine cell
2
posterior foregut
2
+ See 2 more…
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