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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
88
ChIP-seq
37
total RNA-seq
28
single cell RNA-seq
26
ATAC-seq
11
WGBS
Assay category
88
DNA binding
65
Transcription
26
DNA accessibility
11
DNA methylation
Target of assay
63
transcription factor
24
control
14
RNA binding protein
2
chromatin remodeller
Date released
39
November, 2017
27
October, 2018
24
May, 2022
18
September, 2020
17
April, 2018
15
February, 2018
13
August, 2017
8
July, 2018
7
December, 2018
6
February, 2021
6
October, 2017
5
November, 2018
4
December, 2017
1
June, 2018
Available data
188
fastq
164
bam
116
bigWig
83
bed narrowPeak
59
bigBed narrowPeak
47
tsv
6
txt
3
bed bedMethyl
3
bigBed bedMethyl
2
bed bed3+
2
zippedFastqFolder
Organism
190
Homo sapiens
Biosample type
82
tissue
50
primary cell
43
cell line
15
in vitro differentiated cells
Organ
82
pancreas
49
liver
45
blood
bodily fluid
40
epithelium
26
adipose tissue
26
connective tissue
8
spleen
4
embryo
Project
166
AMP
24
HPAP
Genome assembly (visualization)
131
hg19
116
GRCh38
Lab
142
AMP-T2D consortium
24
Klaus Kaestner, Upenn
24
Kyle Gaulton, UCSD
Audit category:
7
missing controlled_by
organ_slims!
bodily fluid
BIOSAMPLE
ASSAY
190 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
WGBS
tissue
islet of Langerhans
6
18
body of pancreas
13
4
subcutaneous adipose tissue
8
1
spleen
7
1
omental fat pad
6
1
+ See 5 more…
primary cell
pancreatic alpha cell
15
4
6
pancreatic beta cell
1
4
mesenchymal cell
4
pancreatic cell
4
pancreatic delta cell
3
+ See 4 more…
cell line
HepG2
43
in vitro differentiated cells
pancreatic endoderm
4
definitive endodermal cell
2
embryonic stem cell
2
endocrine cell
2
posterior foregut
2
+ See 2 more…
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