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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
133
ChIP-seq
26
ATAC-seq
21
total RNA-seq
10
single cell RNA-seq
5
WGBS
Assay category
133
DNA binding
31
Transcription
26
DNA accessibility
5
DNA methylation
Target of assay
104
transcription factor
26
control
18
RNA binding protein
3
chromatin remodeller
Date released
39
November, 2017
32
December, 2018
27
October, 2018
24
May, 2022
17
November, 2018
15
February, 2018
13
August, 2017
8
January, 2019
6
April, 2018
6
October, 2017
4
December, 2017
2
July, 2018
2
September, 2020
Available data
193
fastq
191
bam
141
bigWig
126
bed narrowPeak
102
bigBed narrowPeak
23
tsv
6
txt
3
bed bedMethyl
3
bigBed bedMethyl
2
bed bed3+
2
zippedFastqFolder
Organism
195
Homo sapiens
Biosample type
88
cell line
82
tissue
15
in vitro differentiated cells
10
primary cell
Organ
82
pancreas
49
liver
45
blood
45
bodily fluid
epithelium
26
adipose tissue
26
connective tissue
8
spleen
4
embryo
Project
193
AMP
2
HPAP
Genome assembly (visualization)
156
hg19
141
GRCh38
Lab
169
AMP-T2D consortium
24
Kyle Gaulton, UCSD
2
Klaus Kaestner, Upenn
Audit category:
7
missing controlled_by
organ_slims!
epithelium
BIOSAMPLE
ASSAY
195 results
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ChIP-seq
ATAC-seq
total RNA-seq
single cell RNA-seq
WGBS
cell line
GM12878
45
HepG2
43
tissue
islet of Langerhans
18
6
body of pancreas
13
4
subcutaneous adipose tissue
8
1
spleen
7
1
omental fat pad
6
1
+ See 5 more…
in vitro differentiated cells
pancreatic endoderm
4
definitive endodermal cell
2
embryonic stem cell
2
endocrine cell
2
posterior foregut
2
+ See 2 more…
primary cell
mesenchymal cell
4
pancreatic cell
4
Langerhans cell
2
See all biosamples
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