Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 133ChIP-seq
  • 26ATAC-seq
  • 21total RNA-seq
  • 10single cell RNA-seq
  • 5WGBS
Assay category
  • 133DNA binding
  • 31Transcription
  • 26DNA accessibility
  • 5DNA methylation
Target of assay
  • 104transcription factor
  • 26control
  • 18RNA binding protein
  • 3chromatin remodeller
Date released
  • 39November, 2017
  • 32December, 2018
  • 27October, 2018
  • 24May, 2022
  • 17November, 2018
  • 15February, 2018
  • 13August, 2017
  • 8January, 2019
  • 6April, 2018
  • 6October, 2017
  • 4December, 2017
  • 2July, 2018
  • 2September, 2020
Available data
  • 193fastq
  • 191bam
  • 141bigWig
  • 126bed narrowPeak
  • 102bigBed narrowPeak
  • 23tsv
  • 6txt
  • 3bed bedMethyl
  • 3bigBed bedMethyl
  • 2bed bed3+
  • 2zippedFastqFolder
Organism
  • 195Homo sapiens
Biosample type
  • 88cell line
  • 82tissue
  • 15in vitro differentiated cells
  • 10primary cell
Organ
  • 82pancreas
  • 49liver
  • 45blood
  • 45bodily fluid
  • epithelium
  • 26adipose tissue
  • 26connective tissue
  • 8spleen
  • 4embryo
Project
  • 193AMP
  • 2HPAP
Genome assembly (visualization)
  • 156hg19
  • 141GRCh38
Lab
  • 169AMP-T2D consortium
  • 24Kyle Gaulton, UCSD
  • 2Klaus Kaestner, Upenn
Audit category:
  • 7missing controlled_by
organ_slims!
  • epithelium
BIOSAMPLE
ASSAY

195 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
single cell RNA-seq
WGBS
cell line
GM1287845
HepG243
tissue
islet of Langerhans186
body of pancreas134
subcutaneous adipose tissue81
spleen71
omental fat pad61
in vitro differentiated cells
pancreatic endoderm4
definitive endodermal cell2
embryonic stem cell2
endocrine cell2
posterior foregut2
primary cell
mesenchymal cell4
pancreatic cell4
Langerhans cell2
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego