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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
86
ChIP-seq
37
total RNA-seq
28
single cell RNA-seq
25
ATAC-seq
10
WGBS
Assay category
86
DNA binding
65
Transcription
25
DNA accessibility
10
DNA methylation
Target of assay
64
transcription factor
20
control
13
RNA binding protein
1
chromatin remodeller
Date released
32
December, 2018
27
October, 2018
24
May, 2022
18
September, 2020
17
April, 2018
15
February, 2018
13
November, 2018
11
August, 2017
8
January, 2019
8
July, 2018
6
February, 2021
6
October, 2017
1
June, 2018
Available data
184
fastq
161
bam
117
bigWig
84
bed narrowPeak
60
bigBed narrowPeak
47
tsv
6
txt
3
bed bedMethyl
3
bigBed bedMethyl
2
bed bed3+
2
zippedFastqFolder
Organism
186
Homo sapiens
Biosample type
76
tissue
50
primary cell
45
cell line
15
in vitro differentiated cells
Organ
82
pancreas
liver
45
blood
45
bodily fluid
40
epithelium
26
adipose tissue
26
connective tissue
8
spleen
4
embryo
Project
162
AMP
24
HPAP
Genome assembly (visualization)
132
hg19
117
GRCh38
Lab
138
AMP-T2D consortium
24
Klaus Kaestner, Upenn
24
Kyle Gaulton, UCSD
Audit category:
7
missing controlled_by
organ_slims!
liver
BIOSAMPLE
ASSAY
186 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
WGBS
tissue
islet of Langerhans
6
18
body of pancreas
13
4
subcutaneous adipose tissue
8
1
spleen
7
1
omental fat pad
6
1
+ See 3 more…
primary cell
pancreatic alpha cell
15
4
6
pancreatic beta cell
1
4
mesenchymal cell
4
pancreatic cell
4
pancreatic delta cell
3
+ See 4 more…
cell line
GM12878
45
in vitro differentiated cells
pancreatic endoderm
4
definitive endodermal cell
2
embryonic stem cell
2
endocrine cell
2
posterior foregut
2
+ See 2 more…
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