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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
120
ChIP-seq
15
total RNA-seq
10
single cell RNA-seq
4
ATAC-seq
4
WGBS
Assay category
120
DNA binding
25
Transcription
4
DNA accessibility
4
DNA methylation
Target of assay
96
transcription factor
21
control
14
RNA binding protein
3
chromatin remodeller
Date released
39
November, 2017
32
December, 2018
16
November, 2018
15
February, 2018
14
October, 2018
13
August, 2017
8
January, 2019
6
April, 2018
4
December, 2017
2
July, 2018
2
October, 2017
2
September, 2020
Available data
151
fastq
149
bam
128
bigWig
96
bed narrowPeak
94
bigBed narrowPeak
23
tsv
2
bed bed3+
2
bed bedMethyl
2
bigBed bedMethyl
2
zippedFastqFolder
Organism
153
Homo sapiens
Biosample type
88
cell line
40
tissue
15
in vitro differentiated cells
10
primary cell
Organ
pancreas
49
liver
45
blood
45
bodily fluid
40
epithelium
26
adipose tissue
26
connective tissue
8
spleen
4
embryo
Project
151
AMP
2
HPAP
Genome assembly (visualization)
128
GRCh38
126
hg19
Lab
151
AMP-T2D consortium
2
Klaus Kaestner, Upenn
Audit category:
7
missing controlled_by
organ_slims!
pancreas
BIOSAMPLE
ASSAY
153 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
WGBS
cell line
GM12878
45
HepG2
43
tissue
subcutaneous adipose tissue
8
1
spleen
7
1
omental fat pad
6
1
white adipose tissue
7
right lobe of liver
4
1
+ See 2 more…
in vitro differentiated cells
pancreatic endoderm
4
definitive endodermal cell
2
embryonic stem cell
2
endocrine cell
2
posterior foregut
2
+ See 2 more…
primary cell
mesenchymal cell
4
pancreatic cell
4
Langerhans cell
2
See all biosamples
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