Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 120ChIP-seq
  • 15total RNA-seq
  • 10single cell RNA-seq
  • 4ATAC-seq
  • 4WGBS
Assay category
  • 120DNA binding
  • 25Transcription
  • 4DNA accessibility
  • 4DNA methylation
Target of assay
  • 96transcription factor
  • 21control
  • 14RNA binding protein
  • 3chromatin remodeller
Date released
  • 39November, 2017
  • 32December, 2018
  • 16November, 2018
  • 15February, 2018
  • 14October, 2018
  • 13August, 2017
  • 8January, 2019
  • 6April, 2018
  • 4December, 2017
  • 2July, 2018
  • 2October, 2017
  • 2September, 2020
Available data
  • 151fastq
  • 149bam
  • 128bigWig
  • 96bed narrowPeak
  • 94bigBed narrowPeak
  • 23tsv
  • 2bed bed3+
  • 2bed bedMethyl
  • 2bigBed bedMethyl
  • 2zippedFastqFolder
Organism
  • 153Homo sapiens
Biosample type
  • 88cell line
  • 40tissue
  • 15in vitro differentiated cells
  • 10primary cell
Organ
  • pancreas
  • 49liver
  • 45blood
  • 45bodily fluid
  • 40epithelium
  • 26adipose tissue
  • 26connective tissue
  • 8spleen
  • 4embryo
Project
  • 151AMP
  • 2HPAP
Genome assembly (visualization)
  • 128GRCh38
  • 126hg19
Lab
  • 151AMP-T2D consortium
  • 2Klaus Kaestner, Upenn
Audit category:
  • 7missing controlled_by
organ_slims!
  • pancreas
BIOSAMPLE
ASSAY

153 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
WGBS
cell line
GM1287845
HepG243
tissue
subcutaneous adipose tissue81
spleen71
omental fat pad61
white adipose tissue7
right lobe of liver41
in vitro differentiated cells
pancreatic endoderm4
definitive endodermal cell2
embryonic stem cell2
endocrine cell2
posterior foregut2
primary cell
mesenchymal cell4
pancreatic cell4
Langerhans cell2
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego