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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 131ChIP-seq
  • 36total RNA-seq
  • 26ATAC-seq
  • 12single cell RNA-seq
  • 11WGBS
Assay category
  • 131DNA binding
  • 48Transcription
  • 26DNA accessibility
  • 11DNA methylation
Target of assay
  • 102transcription factor
  • 26control
  • 18RNA binding protein
  • 3chromatin remodeller
Date released
  • 39November, 2017
  • 32December, 2018
  • 27October, 2018
  • 24May, 2022
  • 18September, 2020
  • 17November, 2018
  • 14February, 2018
  • 11August, 2017
  • 8January, 2019
  • 7April, 2018
  • 6February, 2021
  • 6October, 2017
  • 4December, 2017
  • 2July, 2018
  • 1June, 2018
Available data
  • 214fastq
  • 190bam
  • 140bigWig
  • 126bed narrowPeak
  • 102bigBed narrowPeak
  • 30tsv
  • 6txt
  • 3bed bedMethyl
  • 3bigBed bedMethyl
  • 2zippedFastqFolder
Organism
  • 216Homo sapiens
Biosample type
  • 88cell line
  • 80tissue
  • 34primary cell
  • 14in vitro differentiated cells
Organ
  • 70pancreas
  • 49liver
  • 45blood
  • 45bodily fluid
  • 28epithelium
  • 24adipose tissue
  • 24connective tissue
  • 8spleen
  • 4embryo
Project
  • 192AMP
  • 24HPAP
Genome assembly (visualization)
  • 155hg19
  • 140GRCh38
Lab
  • 168AMP-T2D consortium
  • 24Klaus Kaestner, Upenn
  • 24Kyle Gaulton, UCSD
Audit category:
  • 5missing controlled_by
replication_type!
  • anisogenic
BIOSAMPLE
ASSAY

216 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
WGBS
cell line
GM1287845
HepG243
tissue
islet of Langerhans618
body of pancreas134
subcutaneous adipose tissue81
spleen71
omental fat pad61
primary cell
pancreatic alpha cell1516
mesenchymal cell3
Langerhans cell2
pancreatic beta cell11
pancreatic acinar cell1
in vitro differentiated cells
pancreatic endoderm4
definitive endodermal cell2
embryonic stem cell2
endocrine cell2
posterior foregut2
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