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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
131
ChIP-seq
36
total RNA-seq
26
ATAC-seq
12
single cell RNA-seq
11
WGBS
Assay category
131
DNA binding
48
Transcription
26
DNA accessibility
11
DNA methylation
Target of assay
102
transcription factor
26
control
18
RNA binding protein
3
chromatin remodeller
Date released
39
November, 2017
32
December, 2018
27
October, 2018
24
May, 2022
18
September, 2020
17
November, 2018
14
February, 2018
11
August, 2017
8
January, 2019
7
April, 2018
6
February, 2021
6
October, 2017
4
December, 2017
2
July, 2018
1
June, 2018
Available data
214
fastq
190
bam
140
bigWig
126
bed narrowPeak
102
bigBed narrowPeak
30
tsv
6
txt
3
bed bedMethyl
3
bigBed bedMethyl
2
zippedFastqFolder
Organism
216
Homo sapiens
Biosample type
88
cell line
80
tissue
34
primary cell
14
in vitro differentiated cells
Organ
70
pancreas
49
liver
45
blood
45
bodily fluid
28
epithelium
24
adipose tissue
24
connective tissue
8
spleen
4
embryo
Project
192
AMP
24
HPAP
Genome assembly (visualization)
155
hg19
140
GRCh38
Lab
168
AMP-T2D consortium
24
Klaus Kaestner, Upenn
24
Kyle Gaulton, UCSD
Audit category:
5
missing controlled_by
replication_type!
anisogenic
BIOSAMPLE
ASSAY
216 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
WGBS
cell line
GM12878
45
HepG2
43
tissue
islet of Langerhans
6
18
body of pancreas
13
4
subcutaneous adipose tissue
8
1
spleen
7
1
omental fat pad
6
1
+ See 5 more…
primary cell
pancreatic alpha cell
15
1
6
mesenchymal cell
3
Langerhans cell
2
pancreatic beta cell
1
1
pancreatic acinar cell
1
+ See 4 more…
in vitro differentiated cells
pancreatic endoderm
4
definitive endodermal cell
2
embryonic stem cell
2
endocrine cell
2
posterior foregut
2
+ See 1 more…
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