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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 45ChIP-seq
  • 37total RNA-seq
  • 28single cell RNA-seq
  • 26ATAC-seq
  • 5WGBS
Assay category
  • 65Transcription
  • 45DNA binding
  • 26DNA accessibility
  • 5DNA methylation
Target of assay
  • 25transcription factor
  • 20control
  • 10RNA binding protein
Date released
  • 27October, 2018
  • 24May, 2022
  • 18September, 2020
  • 17April, 2018
  • 15February, 2018
  • 13August, 2017
  • 8July, 2018
  • 7December, 2018
  • 6October, 2017
  • 4December, 2017
  • 1June, 2018
  • 1November, 2018
Available data
  • 139fastq
  • 121bam
  • 77bigWig
  • 44bed narrowPeak
  • 41tsv
  • 20bigBed narrowPeak
  • 6txt
  • 3bed bedMethyl
  • 3bigBed bedMethyl
  • 2bed bed3+
  • 2zippedFastqFolder
Organism
  • 141Homo sapiens
Biosample type
  • 82tissue
  • 44primary cell
  • 15in vitro differentiated cells
Organ
  • 76pancreas
  • 34epithelium
  • 26adipose tissue
  • 26connective tissue
  • 8spleen
  • 6liver
  • 4embryo
Project
  • 123AMP
  • 18HPAP
Genome assembly (visualization)
  • 92hg19
  • 77GRCh38
Lab
  • 99AMP-T2D consortium
  • 24Kyle Gaulton, UCSD
  • 18Klaus Kaestner, Upenn
Audit category:
  • 7missing controlled_by
replication_type!
  • isogenic
BIOSAMPLE
ASSAY

141 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
WGBS
tissue
islet of Langerhans618
body of pancreas134
subcutaneous adipose tissue81
spleen71
omental fat pad61
primary cell
pancreatic alpha cell154
pancreatic beta cell14
mesenchymal cell4
pancreatic cell4
pancreatic delta cell3
in vitro differentiated cells
pancreatic endoderm4
definitive endodermal cell2
embryonic stem cell2
endocrine cell2
posterior foregut2
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