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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
90
ChIP-seq
16
single cell RNA-seq
6
WGBS
1
total RNA-seq
Assay category
90
DNA binding
17
Transcription
6
DNA methylation
Target of assay
81
transcription factor
8
RNA binding protein
6
control
3
chromatin remodeller
Date released
39
November, 2017
25
December, 2018
16
November, 2018
10
April, 2018
8
January, 2019
6
February, 2021
6
July, 2018
2
August, 2017
1
February, 2018
Available data
113
fastq
107
bam
101
bigWig
82
bed narrowPeak
82
bigBed narrowPeak
23
tsv
2
bed bed3+
Organism
113
Homo sapiens
Biosample type
88
cell line
22
primary cell
2
tissue
1
in vitro differentiated cells
Organ
45
blood
45
bodily fluid
43
liver
18
epithelium
18
pancreas
2
adipose tissue
2
connective tissue
Project
107
AMP
6
HPAP
Genome assembly (visualization)
101
GRCh38
101
hg19
Lab
107
AMP-T2D consortium
6
Klaus Kaestner, Upenn
Audit category:
2
missing controlled_by
replication_type!
unreplicated
BIOSAMPLE
ASSAY
113 results
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ChIP-seq
single cell RNA-seq
WGBS
total RNA-seq
cell line
GM12878
45
HepG2
43
primary cell
pancreatic alpha cell
3
6
pancreatic beta cell
3
pancreatic cell
3
pancreatic delta cell
2
pancreatic ductal cell
2
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tissue
white adipose tissue
2
in vitro differentiated cells
islet precursor cell
1
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