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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 43ChIP-seq
  • 36total RNA-seq
  • 26ATAC-seq
  • 12single cell RNA-seq
  • 5WGBS
Assay category
  • 48Transcription
  • 43DNA binding
  • 26DNA accessibility
  • 5DNA methylation
Target of assay
  • 23transcription factor
  • 20control
  • 10RNA binding protein
Date released
  • 27October, 2018
  • 24May, 2022
  • 18September, 2020
  • 14February, 2018
  • 11August, 2017
  • 7April, 2018
  • 7December, 2018
  • 6October, 2017
  • 4December, 2017
  • 2July, 2018
  • 1June, 2018
  • 1November, 2018
Available data
  • 120fastq
  • 102bam
  • 58bigWig
  • 44bed narrowPeak
  • 24tsv
  • 20bigBed narrowPeak
  • 6txt
  • 3bed bedMethyl
  • 3bigBed bedMethyl
  • 2zippedFastqFolder
Organism
  • 122Homo sapiens
Biosample type
  • 80tissue
  • 28primary cell
  • 14in vitro differentiated cells
Organ
  • 64pancreas
  • 24adipose tissue
  • 24connective tissue
  • 22epithelium
  • 8spleen
  • 6liver
  • 4embryo
Project
  • 104AMP
  • 18HPAP
Genome assembly (visualization)
  • 73hg19
  • 58GRCh38
Lab
  • 80AMP-T2D consortium
  • 24Kyle Gaulton, UCSD
  • 18Klaus Kaestner, Upenn
Audit category:
  • 5missing controlled_by
BIOSAMPLE
ASSAY

122 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
WGBS
tissue
islet of Langerhans618
body of pancreas134
subcutaneous adipose tissue81
spleen71
omental fat pad61
primary cell
pancreatic alpha cell151
mesenchymal cell3
Langerhans cell2
pancreatic beta cell11
pancreatic acinar cell1
in vitro differentiated cells
pancreatic endoderm4
definitive endodermal cell2
embryonic stem cell2
endocrine cell2
posterior foregut2
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