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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 115ChIP-seq
  • 37total RNA-seq
  • 28single cell RNA-seq
  • 26ATAC-seq
  • 11WGBS
Assay category
  • 115DNA binding
  • 65Transcription
  • 26DNA accessibility
  • 11DNA methylation
Target of assay
  • 104transcription factor
  • 26control
  • RNA binding protein
  • 3chromatin remodeller
Date released
  • 35November, 2017
  • 30December, 2018
  • 24May, 2022
  • 18October, 2018
  • 18September, 2020
  • 17April, 2018
  • 16November, 2018
  • 15February, 2018
  • 13August, 2017
  • 8July, 2018
  • 7January, 2019
  • 6February, 2021
  • 6October, 2017
  • 3December, 2017
  • 1June, 2018
Available data
  • 215fastq
  • 191bam
  • 141bigWig
  • 108bed narrowPeak
  • 84bigBed narrowPeak
  • 47tsv
  • 6txt
  • 3bed bedMethyl
  • 3bigBed bedMethyl
  • 2bed bed3+
  • 2zippedFastqFolder
Organism
  • 217Homo sapiens
Biosample type
  • 80cell line
  • 72tissue
  • 50primary cell
  • 15in vitro differentiated cells
Organ
  • 78pancreas
  • 44liver
  • 41blood
  • 41bodily fluid
  • 40epithelium
  • 21adipose tissue
  • 21connective tissue
  • 8spleen
  • 4embryo
Project
  • 193AMP
  • 24HPAP
Genome assembly (visualization)
  • 156hg19
  • 141GRCh38
Lab
  • 169AMP-T2D consortium
  • 24Klaus Kaestner, Upenn
  • 24Kyle Gaulton, UCSD
Audit category:
  • 7missing controlled_by
target.investigated_as!
  • RNA binding protein
BIOSAMPLE
ASSAY

217 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
WGBS
cell line
GM1287841
HepG239
tissue
islet of Langerhans618
body of pancreas94
spleen71
subcutaneous adipose tissue61
white adipose tissue7
primary cell
pancreatic alpha cell1546
pancreatic beta cell14
mesenchymal cell4
pancreatic cell4
pancreatic delta cell3
in vitro differentiated cells
pancreatic endoderm4
definitive endodermal cell2
embryonic stem cell2
endocrine cell2
posterior foregut2
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