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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 107ChIP-seq
  • 37total RNA-seq
  • 28single cell RNA-seq
  • 26ATAC-seq
  • 11WGBS
Assay category
  • 107DNA binding
  • 65Transcription
  • 26DNA accessibility
  • 11DNA methylation
Target of assay
  • 104transcription factor
  • control
  • 18RNA binding protein
  • 3chromatin remodeller
Date released
  • 35November, 2017
  • 28December, 2018
  • 24May, 2022
  • 18September, 2020
  • 17April, 2018
  • 15February, 2018
  • 15November, 2018
  • 13August, 2017
  • 13October, 2018
  • 8January, 2019
  • 8July, 2018
  • 6February, 2021
  • 6October, 2017
  • 2December, 2017
  • 1June, 2018
Available data
  • 207fastq
  • 183bam
  • 159bigWig
  • 126bed narrowPeak
  • 102bigBed narrowPeak
  • 47tsv
  • 6txt
  • 3bed bedMethyl
  • 3bigBed bedMethyl
  • 2bed bed3+
  • 2zippedFastqFolder
Organism
  • 209Homo sapiens
Biosample type
  • 82cell line
  • 62tissue
  • 50primary cell
  • 15in vitro differentiated cells
Organ
  • 77pancreas
  • 43blood
  • 43bodily fluid
  • 43liver
  • 40epithelium
  • 17adipose tissue
  • 17connective tissue
  • 4embryo
  • 4spleen
Project
  • 185AMP
  • 24HPAP
Genome assembly (visualization)
  • 174hg19
  • 159GRCh38
Lab
  • 161AMP-T2D consortium
  • 24Klaus Kaestner, Upenn
  • 24Kyle Gaulton, UCSD
Audit category:
  • 7missing controlled_by
target.investigated_as!
  • control
BIOSAMPLE
ASSAY

209 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
WGBS
cell line
GM1287843
HepG239
tissue
islet of Langerhans618
body of pancreas84
white adipose tissue7
omental fat pad31
spleen31
primary cell
pancreatic alpha cell1546
pancreatic beta cell14
mesenchymal cell4
pancreatic cell4
pancreatic delta cell3
in vitro differentiated cells
pancreatic endoderm4
definitive endodermal cell2
embryonic stem cell2
endocrine cell2
posterior foregut2
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