Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 37total RNA-seq
  • 29ChIP-seq
  • 28single cell RNA-seq
  • 26ATAC-seq
  • 11WGBS
Assay category
  • 65Transcription
  • 29DNA binding
  • 26DNA accessibility
  • 11DNA methylation
Target of assay
  • transcription factor
  • 26control
  • 18RNA binding protein
  • 3chromatin remodeller
Date released
  • 24May, 2022
  • 18September, 2020
  • 17April, 2018
  • 15February, 2018
  • 14October, 2018
  • 8July, 2018
  • 6August, 2017
  • 6December, 2018
  • 6February, 2021
  • 6October, 2017
  • 5November, 2017
  • 3November, 2018
  • 2December, 2017
  • 1June, 2018
Available data
  • 129fastq
  • 105bam
  • 55bigWig
  • 47tsv
  • 29bed narrowPeak
  • 6txt
  • 5bigBed narrowPeak
  • 3bed bedMethyl
  • 3bigBed bedMethyl
  • 2zippedFastqFolder
Organism
  • 131Homo sapiens
Biosample type
  • 57tissue
  • 50primary cell
  • 15in vitro differentiated cells
  • 9cell line
Organ
  • 74pancreas
  • 40epithelium
  • 14adipose tissue
  • 14connective tissue
  • 9liver
  • 5spleen
  • 4blood
  • 4bodily fluid
  • 4embryo
Project
  • 107AMP
  • 24HPAP
Genome assembly (visualization)
  • 70hg19
  • 55GRCh38
Lab
  • 83AMP-T2D consortium
  • 24Klaus Kaestner, Upenn
  • 24Kyle Gaulton, UCSD
target.investigated_as!
  • transcription factor
BIOSAMPLE
ASSAY

131 results

search-icontable-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
WGBS
tissue
islet of Langerhans618
body of pancreas54
subcutaneous adipose tissue61
spleen41
omental fat pad31
primary cell
pancreatic alpha cell1546
pancreatic beta cell14
mesenchymal cell4
pancreatic cell4
pancreatic delta cell3
in vitro differentiated cells
pancreatic endoderm4
definitive endodermal cell2
embryonic stem cell2
endocrine cell2
posterior foregut2
cell line
HepG25
GM128784
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego