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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
134
total RNA-seq
10
ChIP-seq
1
DNase-seq
1
WGBS
Assay category
134
Transcription
10
DNA binding
1
DNA accessibility
1
DNA methylation
Target of assay
10
transcription factor
1
RNA binding protein
Date released
93
August, 2017
39
February, 2023
6
February, 2018
5
November, 2018
2
November, 2017
1
December, 2018
Available data
146
fastq
107
bam
107
bigWig
95
tsv
8
bed narrowPeak
8
bigBed narrowPeak
1
bed bedMethyl
1
bed broadPeak
1
bigBed bedMethyl
1
bigBed broadPeak
Organism
146
Homo sapiens
Biosample type
93
tissue
40
primary cell
7
cell line
6
in vitro differentiated cells
Organ
196
pancreas
epithelium
4
blood
4
bodily fluid
3
adipose tissue
3
connective tissue
3
liver
1
embryo
Project
107
AMP
39
HPAP
Genome assembly (visualization)
106
GRCh38
106
hg19
Lab
107
AMP-T2D consortium
39
Klaus Kaestner, Upenn
Audit category:
3
missing controlled_by
organ_slims!
epithelium
BIOSAMPLE
ASSAY
146 results
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total RNA-seq
ChIP-seq
DNase-seq
WGBS
tissue
islet of Langerhans
89
white adipose tissue
3
pancreas
1
primary cell
exocrine cell
39
skeletal muscle myoblast
1
cell line
GM12878
4
HepG2
3
in vitro differentiated cells
definitive endodermal cell
1
embryonic stem cell
1
endocrine cell
1
pancreatic endoderm
1
posterior foregut
1
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