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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 42WGBS
  • 10ChIP-seq
  • 1DNase-seq
Assay category
  • 42DNA methylation
  • 10DNA binding
  • 1DNA accessibility
Target of assay
  • 10transcription factor
  • 1RNA binding protein
Date released
  • 41May, 2022
  • 5November, 2018
  • 4August, 2017
  • 2November, 2017
  • 1December, 2018
Available data
  • 41zippedFastqFolder
  • 12bam
  • 12bigWig
  • 12fastq
  • 8bed narrowPeak
  • 8bigBed narrowPeak
  • 1bed bedMethyl
  • 1bed broadPeak
  • 1bigBed bedMethyl
  • 1bigBed broadPeak
Organism
  • 53Homo sapiens
Biosample type
  • 42primary cell
  • 7cell line
  • 4tissue
Organ
  • 42pancreas
  • 41epithelium
  • 4blood
  • 4bodily fluid
  • 3adipose tissue
  • 3connective tissue
  • 3liver
Project
  • 41HPAP
  • 12AMP
Genome assembly (visualization)
  • 11GRCh38
  • 11hg19
Lab
  • 41Klaus Kaestner, Upenn
  • 12AMP-T2D consortium
Audit category:
  • 3missing controlled_by
replicates.library.nucleic_acid_term_name!
  • RNA
BIOSAMPLE
ASSAY

53 results

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WGBS
ChIP-seq
DNase-seq
primary cell
pancreatic alpha cell25
pancreatic beta cell16
skeletal muscle myoblast1
cell line
GM128784
HepG23
tissue
white adipose tissue3
pancreas1
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