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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
199
total RNA-seq
42
WGBS
10
ChIP-seq
1
DNase-seq
Assay category
199
Transcription
42
DNA methylation
10
DNA binding
1
DNA accessibility
Target of assay
10
transcription factor
1
RNA binding protein
Date released
93
August, 2017
76
February, 2023
41
May, 2022
26
September, 2018
6
February, 2018
5
November, 2018
2
November, 2017
2
October, 2018
1
December, 2018
Available data
211
fastq
135
bam
135
bigWig
123
tsv
41
zippedFastqFolder
8
bed narrowPeak
8
bigBed narrowPeak
1
bed bedMethyl
1
bed broadPeak
1
bigBed bedMethyl
1
bigBed broadPeak
Organism
252
Homo sapiens
Biosample type
146
primary cell
93
tissue
7
cell line
6
in vitro differentiated cells
Organ
196
pancreas
106
epithelium
4
blood
4
bodily fluid
3
adipose tissue
3
connective tissue
3
liver
1
embryo
Project
135
AMP
117
HPAP
Genome assembly (visualization)
134
GRCh38
134
hg19
Lab
135
AMP-T2D consortium
117
Klaus Kaestner, Upenn
Audit category:
3
missing controlled_by
type!!!
Annotation
BIOSAMPLE
ASSAY
252 results
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total RNA-seq
WGBS
ChIP-seq
DNase-seq
primary cell
pancreatic alpha cell
37
25
exocrine cell
39
pancreatic beta cell
20
16
pancreatic acinar cell
4
pancreatic ductal cell
4
+ See 1 more…
tissue
islet of Langerhans
89
white adipose tissue
3
pancreas
1
cell line
GM12878
4
HepG2
3
in vitro differentiated cells
definitive endodermal cell
1
embryonic stem cell
1
endocrine cell
1
pancreatic endoderm
1
posterior foregut
1
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