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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 238ChIP-seq
  • 11DNase-seq
  • 4RRBS
Assay category
  • 238DNA binding
  • 11DNA accessibility
  • 4DNA methylation
Target of assay
  • 92histone
  • 92histone modification
  • 92transcription factor
  • 54control
  • 48broad histone mark
  • 44narrow histone mark
  • 19RNA binding protein
  • 9chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 107November, 2017
  • 70August, 2017
  • 26December, 2017
  • 22February, 2018
  • 12November, 2018
  • 9October, 2017
  • 6September, 2017
  • 1January, 2019
Available data
  • 253fastq
  • 247bam
  • 204bigWig
  • 191bed narrowPeak
  • 139bigBed narrowPeak
  • 91bed broadPeak
  • 82bigBed broadPeak
  • 37bed bed3+
  • 37tagAlign
  • 4bed bedMethyl
  • 4bigBed bedMethyl
Organism
  • 246Homo sapiens
Biosample type
  • 102cell line
  • 57tissue
  • 48primary cell
  • 44in vitro differentiated cells
  • 2stem cell
Organ
  • 111liver
  • 52pancreas
  • 31epithelium
  • 20brain
  • 18embryo
  • 6vasculature
  • 4connective tissue
  • 3adipose tissue
  • 3blood vessel
  • 2musculature of body
  • 1blood
  • 1bodily fluid
  • 1spleen
Project
  • 253AMP
Genome assembly (visualization)
  • 215hg19
  • 183GRCh38
Lab
  • 253AMP-T2D consortium
Audit category:
  • 3inconsistent ontology term
Audit category:
  • 8missing controlled_by
Audit category:
  • 22inconsistent control read length
  • 3inconsistent assembly
  • 1inconsistent control run_type
files.read_length!
  • 25
BIOSAMPLE
ASSAY

253 results

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Clear Filters
ChIP-seq
DNase-seq
RRBS
cell line
HepG2101
GM128781
tissue
islet of Langerhans18
brain92
pancreas10
liver621
adipose tissue2
primary cell
skeletal muscle myoblast1511
pancreatic alpha cell11
pancreatic beta cell11
astrocyte of the cerebellum3
brain microvascular endothelial cell3
in vitro differentiated cells
pancreatic endoderm15
primitive gut cell7
definitive endodermal cell5
Posterior foregut4
Hepatic endoderm3
stem cell
hESC2
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