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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 242ChIP-seq
  • 11DNase-seq
  • 4RRBS
Assay category
  • 242DNA binding
  • 11DNA accessibility
  • 4DNA methylation
Target of assay
  • 100transcription factor
  • 90histone
  • 90histone modification
  • 52control
  • 46narrow histone mark
  • 44broad histone mark
  • 22RNA binding protein
  • 17chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 113November, 2017
  • 70August, 2017
  • 22February, 2018
  • 21December, 2017
  • 16November, 2018
  • 9October, 2017
  • 6September, 2017
Available data
  • 257fastq
  • 251bam
  • 209bigWig
  • 195bed narrowPeak
  • 148bigBed narrowPeak
  • 93bed broadPeak
  • 84bigBed broadPeak
  • 39tagAlign
  • 32bed bed3+
  • 4bed bedMethyl
  • 4bigBed bedMethyl
Organism
  • 250Homo sapiens
Biosample type
  • 111cell line
  • 57tissue
  • 48primary cell
  • 40in vitro differentiated cells
  • 1stem cell
Organ
  • 121liver
  • 52pancreas
  • 31epithelium
  • 20brain
  • 17embryo
  • 6vasculature
  • 4connective tissue
  • 3adipose tissue
  • 3blood vessel
  • 2musculature of body
  • 1spleen
Project
  • 257AMP
Genome assembly (visualization)
  • 220hg19
  • 185GRCh38
Lab
  • 257AMP-T2D consortium
Audit category:
  • 3inconsistent ontology term
Audit category:
  • 15missing controlled_by
Audit category:
  • 26inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
files.read_length!
  • 50
BIOSAMPLE
ASSAY

257 results

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Clear Filters
ChIP-seq
DNase-seq
RRBS
cell line
HepG2111
tissue
islet of Langerhans18
brain92
pancreas10
liver621
adipose tissue2
primary cell
skeletal muscle myoblast1511
pancreatic alpha cell11
pancreatic beta cell11
astrocyte of the cerebellum3
brain microvascular endothelial cell3
in vitro differentiated cells
pancreatic endoderm14
primitive gut cell6
definitive endodermal cell4
Hepatic endoderm3
Posterior foregut3
stem cell
hESC1
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