Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 239ChIP-seq
  • 4RRBS
  • 1DNase-seq
Assay category
  • 239DNA binding
  • 4DNA methylation
  • 1DNA accessibility
Target of assay
  • 93histone
  • 93histone modification
  • 92transcription factor
  • 54control
  • 49broad histone mark
  • 44narrow histone mark
  • 19RNA binding protein
  • 9chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 109November, 2017
  • 67August, 2017
  • 26December, 2017
  • 22February, 2018
  • 9October, 2017
  • 6September, 2017
  • 4November, 2018
  • 1January, 2019
Available data
  • 244fastq
  • 238bam
  • 195bigWig
  • 180bed narrowPeak
  • 128bigBed narrowPeak
  • 83bed broadPeak
  • 74bigBed broadPeak
  • 39tagAlign
  • 29bed bed3+
  • 4bed bedMethyl
  • 4bigBed bedMethyl
Organism
  • 237Homo sapiens
Biosample type
  • 104cell line
  • 49tissue
  • 46primary cell
  • 43in vitro differentiated cells
  • 2stem cell
Organ
  • 110liver
  • 50pancreas
  • 31epithelium
  • 19brain
  • 18embryo
  • 6vasculature
  • 3blood vessel
  • 2adipose tissue
  • 2connective tissue
  • 2musculature of body
  • 1blood
  • 1bodily fluid
Project
  • 244AMP
Genome assembly (visualization)
  • 206hg19
  • 173GRCh38
Lab
  • 244AMP-T2D consortium
Audit category:
  • 3inconsistent ontology term
Audit category:
  • 8missing controlled_by
Audit category:
  • 23inconsistent control read length
  • 2inconsistent assembly
files.run_type!
  • paired-ended
BIOSAMPLE
ASSAY

244 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
RRBS
DNase-seq
cell line
HepG2103
GM128781
tissue
islet of Langerhans18
brain91
pancreas10
liver61
adipose tissue2
primary cell
skeletal muscle myoblast141
pancreatic alpha cell11
pancreatic beta cell11
astrocyte of the cerebellum3
brain microvascular endothelial cell3
in vitro differentiated cells
pancreatic endoderm15
primitive gut cell7
definitive endodermal cell5
Posterior foregut4
Hepatic endoderm3
stem cell
hESC2
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego