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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 241ChIP-seq
  • 4RRBS
  • 2DNase-seq
Assay category
  • 241DNA binding
  • 4DNA methylation
  • 2DNA accessibility
Target of assay
  • 95histone
  • 95histone modification
  • 92transcription factor
  • 54control
  • 49broad histone mark
  • 46narrow histone mark
  • 19RNA binding protein
  • 9chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 110November, 2017
  • 69August, 2017
  • 26December, 2017
  • 22February, 2018
  • 9October, 2017
  • 6September, 2017
  • 4November, 2018
  • 1January, 2019
Available data
  • 247fastq
  • 241bam
  • 198bigWig
  • 183bed narrowPeak
  • 131bigBed narrowPeak
  • 84bed broadPeak
  • 75bigBed broadPeak
  • 39tagAlign
  • 29bed bed3+
  • 4bed bedMethyl
  • 4bigBed bedMethyl
Organism
  • 240Homo sapiens
Biosample type
  • 105cell line
  • 49tissue
  • 48primary cell
  • 43in vitro differentiated cells
  • 2stem cell
Organ
  • 111liver
  • 50pancreas
  • 31epithelium
  • 19brain
  • 18embryo
  • 6vasculature
  • 3blood vessel
  • 2adipose tissue
  • 2connective tissue
  • 2musculature of body
  • 1blood
  • 1bodily fluid
Project
  • 247AMP
Genome assembly (visualization)
  • 209hg19
  • 175GRCh38
Lab
  • 247AMP-T2D consortium
Audit category:
  • 3inconsistent ontology term
Audit category:
  • 9missing controlled_by
Audit category:
  • 24inconsistent control read length
  • 3inconsistent assembly
  • 1inconsistent control run_type
BIOSAMPLE
ASSAY

247 results

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Clear Filters
ChIP-seq
RRBS
DNase-seq
cell line
HepG2104
GM128781
tissue
islet of Langerhans18
brain91
pancreas10
liver61
adipose tissue2
primary cell
skeletal muscle myoblast1511
pancreatic alpha cell11
pancreatic beta cell11
astrocyte of the cerebellum3
brain microvascular endothelial cell3
in vitro differentiated cells
pancreatic endoderm15
primitive gut cell7
definitive endodermal cell5
Posterior foregut4
Hepatic endoderm3
stem cell
hESC2
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