Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 185ChIP-seq
  • 9DNase-seq
Assay category
  • 185DNA binding
  • 9DNA accessibility
Target of assay
  • 96transcription factor
  • 52histone
  • 52histone modification
  • 37control
  • 26broad histone mark
  • 26narrow histone mark
  • 19RNA binding protein
  • 16chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 114November, 2017
  • August, 2017
  • 26December, 2017
  • 22February, 2018
  • 16November, 2018
  • 9October, 2017
  • 6September, 2017
  • 1January, 2019
Available data
  • 194fastq
  • 192bam
  • 165bigWig
  • 152bed narrowPeak
  • 122bigBed narrowPeak
  • 72bed broadPeak
  • 69bigBed broadPeak
  • 25bed bed3+
  • 20tagAlign
Organism
  • 194Homo sapiens
Biosample type
  • 113cell line
  • 43in vitro differentiated cells
  • 27tissue
  • 9primary cell
  • 2stem cell
Organ
  • 118liver
  • 20brain
  • 18embryo
  • 9epithelium
  • 8pancreas
  • 6vasculature
  • 3blood vessel
  • 1adipose tissue
  • 1blood
  • 1bodily fluid
  • 1connective tissue
  • 1spleen
Project
  • 194AMP
Genome assembly (visualization)
  • 172hg19
  • 143GRCh38
Lab
  • 194AMP-T2D consortium
Audit category:
  • 3inconsistent ontology term
Audit category:
  • 13missing controlled_by
Audit category:
  • 29inconsistent control read length
  • 8inconsistent control run_type
month_released!
  • August, 2017
BIOSAMPLE
ASSAY

194 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
DNase-seq
cell line
HepG2112
GM128781
in vitro differentiated cells
pancreatic endoderm15
primitive gut cell7
definitive endodermal cell5
Posterior foregut4
Hepatic endoderm3
tissue
brain92
islet of Langerhans6
liver32
body of pancreas2
omental fat pad1
primary cell
astrocyte of the cerebellum3
brain microvascular endothelial cell3
choroid plexus epithelial cell3
stem cell
hESC2
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego