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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 223ChIP-seq
  • 11DNase-seq
  • 4RRBS
Assay category
  • 223DNA binding
  • 11DNA accessibility
  • 4DNA methylation
Target of assay
  • 94transcription factor
  • 82histone
  • 82histone modification
  • 47control
  • 44broad histone mark
  • 38narrow histone mark
  • 21RNA binding protein
  • 17chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 114November, 2017
  • 70August, 2017
  • December, 2017
  • 22February, 2018
  • 16November, 2018
  • 9October, 2017
  • 6September, 2017
  • 1January, 2019
Available data
  • 238fastq
  • 232bam
  • 197bigWig
  • 182bed narrowPeak
  • 146bigBed narrowPeak
  • 93bed broadPeak
  • 84bigBed broadPeak
  • 39tagAlign
  • 23bed bed3+
  • 4bed bedMethyl
  • 4bigBed bedMethyl
Organism
  • 231Homo sapiens
Biosample type
  • 113cell line
  • 54tissue
  • 48primary cell
  • 23in vitro differentiated cells
Organ
  • 119liver
  • 52pancreas
  • 28epithelium
  • 20brain
  • 9embryo
  • 6vasculature
  • 4connective tissue
  • 3adipose tissue
  • 3blood vessel
  • 2musculature of body
  • 1blood
  • 1bodily fluid
  • 1spleen
Project
  • 238AMP
Genome assembly (visualization)
  • 203hg19
  • 167GRCh38
Lab
  • 238AMP-T2D consortium
Audit category:
  • 14missing controlled_by
Audit category:
  • 25inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
month_released!
  • December, 2017
BIOSAMPLE
ASSAY

238 results

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Clear Filters
ChIP-seq
DNase-seq
RRBS
cell line
HepG2112
GM128781
tissue
islet of Langerhans18
brain92
pancreas10
liver321
adipose tissue2
primary cell
skeletal muscle myoblast1511
pancreatic alpha cell11
pancreatic beta cell11
astrocyte of the cerebellum3
brain microvascular endothelial cell3
in vitro differentiated cells
pancreatic endoderm9
embryonic stem cell3
endocrine cell3
posterior foregut3
primitive gut cell3
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