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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 227ChIP-seq
  • 11DNase-seq
  • 4RRBS
Assay category
  • 227DNA binding
  • 11DNA accessibility
  • 4DNA methylation
Target of assay
  • 100transcription factor
  • 81histone
  • 81histone modification
  • 46control
  • 42broad histone mark
  • 39narrow histone mark
  • 22RNA binding protein
  • 17chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 114November, 2017
  • 70August, 2017
  • 26December, 2017
  • February, 2018
  • 16November, 2018
  • 9October, 2017
  • 6September, 2017
  • 1January, 2019
Available data
  • 242fastq
  • 236bam
  • 201bigWig
  • 186bed narrowPeak
  • 148bigBed narrowPeak
  • 93bed broadPeak
  • 84bigBed broadPeak
  • 39tagAlign
  • 37bed bed3+
  • 4bed bedMethyl
  • 4bigBed bedMethyl
Organism
  • 235Homo sapiens
Biosample type
  • 113cell line
  • 57tissue
  • 48primary cell
  • 22in vitro differentiated cells
  • 2stem cell
Organ
  • 122liver
  • 52pancreas
  • 31epithelium
  • 20brain
  • 9embryo
  • 6vasculature
  • 4connective tissue
  • 3adipose tissue
  • 3blood vessel
  • 2musculature of body
  • 1blood
  • 1bodily fluid
  • 1spleen
Project
  • 242AMP
Genome assembly (visualization)
  • 212hg19
  • 176GRCh38
Lab
  • 242AMP-T2D consortium
Audit category:
  • 3inconsistent ontology term
Audit category:
  • 15missing controlled_by
Audit category:
  • 31inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
month_released!
  • February, 2018
BIOSAMPLE
ASSAY

242 results

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Clear Filters
ChIP-seq
DNase-seq
RRBS
cell line
HepG2112
GM128781
tissue
islet of Langerhans18
brain92
pancreas10
liver621
adipose tissue2
primary cell
skeletal muscle myoblast1511
pancreatic alpha cell11
pancreatic beta cell11
astrocyte of the cerebellum3
brain microvascular endothelial cell3
in vitro differentiated cells
pancreatic endoderm6
Posterior foregut4
definitive endodermal cell4
primitive gut cell4
Hepatic endoderm3
stem cell
hESC2
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