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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 135ChIP-seq
  • 11DNase-seq
  • 4RRBS
Assay category
  • 135DNA binding
  • 11DNA accessibility
  • 4DNA methylation
Target of assay
  • 77histone
  • 77histone modification
  • 41broad histone mark
  • 41control
  • 36narrow histone mark
  • 17transcription factor
  • 6RNA binding protein
  • 6chromatin remodeller
Date released
  • November, 2017
  • 70August, 2017
  • 26December, 2017
  • 22February, 2018
  • 16November, 2018
  • 9October, 2017
  • 6September, 2017
  • 1January, 2019
Available data
  • 150fastq
  • 145bam
  • 104bigWig
  • 102bed narrowPeak
  • 50bigBed narrowPeak
  • 37bed bed3+
  • 33bed broadPeak
  • 27tagAlign
  • 24bigBed broadPeak
  • 4bed bedMethyl
  • 4bigBed bedMethyl
Organism
  • 143Homo sapiens
Biosample type
  • 57tissue
  • 44in vitro differentiated cells
  • 39primary cell
  • 8cell line
  • 2stem cell
Organ
  • 52pancreas
  • 25epithelium
  • 18embryo
  • 17liver
  • 11brain
  • 4connective tissue
  • 3adipose tissue
  • 2musculature of body
  • 1blood
  • 1bodily fluid
  • 1spleen
Project
  • 150AMP
Genome assembly (visualization)
  • 115hg19
  • 108GRCh38
Lab
  • 150AMP-T2D consortium
Audit category:
  • 3inconsistent ontology term
Audit category:
  • 9missing controlled_by
Audit category:
  • 13inconsistent control read length
  • 5inconsistent control run_type
  • 3inconsistent assembly
month_released!
  • November, 2017
BIOSAMPLE
ASSAY

150 results

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Clear Filters
ChIP-seq
DNase-seq
RRBS
tissue
islet of Langerhans18
brain92
pancreas10
liver621
adipose tissue2
in vitro differentiated cells
pancreatic endoderm15
primitive gut cell7
definitive endodermal cell5
Posterior foregut4
Hepatic endoderm3
primary cell
skeletal muscle myoblast1511
pancreatic alpha cell11
pancreatic beta cell11
cell line
HepG27
GM128781
stem cell
hESC2
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