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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 242ChIP-seq
  • 4RRBS
  • 2DNase-seq
Assay category
  • 242DNA binding
  • 4DNA methylation
  • 2DNA accessibility
Target of assay
  • 95histone
  • 95histone modification
  • 93transcription factor
  • 54control
  • 49broad histone mark
  • 46narrow histone mark
  • 20RNA binding protein
  • 12chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 114November, 2017
  • 70August, 2017
  • 26December, 2017
  • 22February, 2018
  • November, 2018
  • 9October, 2017
  • 6September, 2017
  • 1January, 2019
Available data
  • 248fastq
  • 242bam
  • 199bigWig
  • 184bed narrowPeak
  • 132bigBed narrowPeak
  • 84bed broadPeak
  • 75bigBed broadPeak
  • 39tagAlign
  • 28bed bed3+
  • 4bed bedMethyl
  • 4bigBed bedMethyl
Organism
  • 241Homo sapiens
Biosample type
  • 106cell line
  • 48primary cell
  • 48tissue
  • 44in vitro differentiated cells
  • 2stem cell
Organ
  • 112liver
  • 50pancreas
  • 31epithelium
  • 18brain
  • 18embryo
  • 6vasculature
  • 3blood vessel
  • 3connective tissue
  • 2adipose tissue
  • 2musculature of body
  • 1blood
  • 1bodily fluid
Project
  • 248AMP
Genome assembly (visualization)
  • 210hg19
  • 174GRCh38
Lab
  • 248AMP-T2D consortium
Audit category:
  • 3inconsistent ontology term
Audit category:
  • 13missing controlled_by
Audit category:
  • 26inconsistent control read length
  • 5inconsistent control run_type
  • 3inconsistent assembly
month_released!
  • November, 2018
BIOSAMPLE
ASSAY

248 results

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Clear Filters
ChIP-seq
RRBS
DNase-seq
cell line
HepG2105
GM128781
primary cell
skeletal muscle myoblast1511
pancreatic alpha cell11
pancreatic beta cell11
astrocyte of the cerebellum3
brain microvascular endothelial cell3
tissue
islet of Langerhans18
pancreas10
brain9
liver61
adipose tissue2
in vitro differentiated cells
pancreatic endoderm15
primitive gut cell7
definitive endodermal cell5
Posterior foregut4
Hepatic endoderm3
stem cell
hESC2
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