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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 231ChIP-seq
  • 11DNase-seq
  • 4RRBS
Assay category
  • 231DNA binding
  • 11DNA accessibility
  • 4DNA methylation
Target of assay
  • 99transcription factor
  • 83histone
  • 83histone modification
  • 49control
  • 45broad histone mark
  • 38narrow histone mark
  • 22RNA binding protein
  • 17chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 114November, 2017
  • 70August, 2017
  • 17December, 2017
  • 16November, 2018
  • 13February, 2018
  • 9October, 2017
  • 6September, 2017
  • 1January, 2019
Available data
  • 246fastq
  • 240bam
  • 203bigWig
  • 188bed narrowPeak
  • 148bigBed narrowPeak
  • 93bed broadPeak
  • 84bigBed broadPeak
  • 39tagAlign
  • 34bed bed3+
  • 4bed bedMethyl
  • 4bigBed bedMethyl
Organism
  • 239Homo sapiens
Biosample type
  • 113cell line
  • 57tissue
  • 48primary cell
  • 26in vitro differentiated cells
  • 2stem cell
Organ
  • 122liver
  • 52pancreas
  • 31epithelium
  • 20brain
  • embryo
  • 6vasculature
  • 4connective tissue
  • 3adipose tissue
  • 3blood vessel
  • 2musculature of body
  • 1blood
  • 1bodily fluid
  • 1spleen
Project
  • 246AMP
Genome assembly (visualization)
  • 213hg19
  • 177GRCh38
Lab
  • 246AMP-T2D consortium
Audit category:
  • 14missing controlled_by
Audit category:
  • 29inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
organ_slims!
  • embryo
BIOSAMPLE
ASSAY

246 results

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Clear Filters
ChIP-seq
DNase-seq
RRBS
cell line
HepG2112
GM128781
tissue
islet of Langerhans18
brain92
pancreas10
liver621
adipose tissue2
primary cell
skeletal muscle myoblast1511
pancreatic alpha cell11
pancreatic beta cell11
astrocyte of the cerebellum3
brain microvascular endothelial cell3
in vitro differentiated cells
primitive gut cell7
definitive endodermal cell5
Posterior foregut4
embryonic stem cell3
endocrine cell3
stem cell
hESC2
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