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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 131ChIP-seq
  • 8DNase-seq
  • 3RRBS
Assay category
  • 131DNA binding
  • 8DNA accessibility
  • 3DNA methylation
Target of assay
  • 79histone
  • 79histone modification
  • 42control
  • 41broad histone mark
  • 38narrow histone mark
  • 10transcription factor
  • 6RNA binding protein
  • 1chromatin remodeller
Date released
  • 66August, 2017
  • 23December, 2017
  • 22February, 2018
  • 9November, 2017
  • 9October, 2017
  • 6November, 2018
  • 6September, 2017
  • 1January, 2019
Available data
  • 142fastq
  • 138bam
  • 99bigWig
  • 94bed narrowPeak
  • 43bigBed narrowPeak
  • 36bed broadPeak
  • 33bed bed3+
  • 27bigBed broadPeak
  • 27tagAlign
  • 3bed bedMethyl
  • 3bigBed bedMethyl
Organism
  • 135Homo sapiens
Biosample type
  • 48primary cell
  • 47tissue
  • 44in vitro differentiated cells
  • 2stem cell
  • 1cell line
Organ
  • liver
  • 52pancreas
  • 31epithelium
  • 20brain
  • 18embryo
  • 6vasculature
  • 4connective tissue
  • 3adipose tissue
  • 3blood vessel
  • 2musculature of body
  • 1blood
  • 1bodily fluid
  • 1spleen
Project
  • 142AMP
Genome assembly (visualization)
  • 109hg19
  • 100GRCh38
Lab
  • 142AMP-T2D consortium
Audit category:
  • 3inconsistent ontology term
Audit category:
  • 7missing controlled_by
Audit category:
  • 7inconsistent control read length
  • 3inconsistent assembly
  • 1inconsistent control run_type
organ_slims!
  • liver
BIOSAMPLE
ASSAY

142 results

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Clear Filters
ChIP-seq
DNase-seq
RRBS
primary cell
skeletal muscle myoblast1511
pancreatic alpha cell11
pancreatic beta cell11
astrocyte of the cerebellum3
brain microvascular endothelial cell3
tissue
islet of Langerhans18
brain92
pancreas10
adipose tissue2
body of pancreas2
in vitro differentiated cells
pancreatic endoderm15
primitive gut cell7
definitive endodermal cell5
Posterior foregut4
Hepatic endoderm3
stem cell
hESC2
cell line
GM128781
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