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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 199ChIP-seq
  • 9DNase-seq
  • 4RRBS
Assay category
  • 199DNA binding
  • 9DNA accessibility
  • 4DNA methylation
Target of assay
  • 99transcription factor
  • 66histone
  • 66histone modification
  • 34control
  • 34narrow histone mark
  • 32broad histone mark
  • 21RNA binding protein
  • 17chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 114November, 2017
  • 26August, 2017
  • 26December, 2017
  • 22February, 2018
  • 14November, 2018
  • 9October, 2017
  • 1January, 2019
Available data
  • 212fastq
  • 206bam
  • 183bigWig
  • 169bed narrowPeak
  • 138bigBed narrowPeak
  • 85bed broadPeak
  • 82bigBed broadPeak
  • 32tagAlign
  • 22bed bed3+
  • 4bed bedMethyl
  • 4bigBed bedMethyl
Organism
  • 212Homo sapiens
Biosample type
  • 113cell line
  • 44in vitro differentiated cells
  • 27tissue
  • 26primary cell
  • 2stem cell
Organ
  • 122liver
  • pancreas
  • 31epithelium
  • 20brain
  • 18embryo
  • 6vasculature
  • 4connective tissue
  • 3adipose tissue
  • 3blood vessel
  • 2musculature of body
  • 1blood
  • 1bodily fluid
  • 1spleen
Project
  • 212AMP
Genome assembly (visualization)
  • 192hg19
  • 156GRCh38
Lab
  • 212AMP-T2D consortium
Audit category:
  • 3inconsistent ontology term
Audit category:
  • 13missing controlled_by
Audit category:
  • 31inconsistent control read length
  • 9inconsistent control run_type
  • 2inconsistent assembly
organ_slims!
  • pancreas
BIOSAMPLE
ASSAY

212 results

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Clear Filters
ChIP-seq
DNase-seq
RRBS
cell line
HepG2112
GM128781
in vitro differentiated cells
pancreatic endoderm15
primitive gut cell7
definitive endodermal cell5
Posterior foregut4
Hepatic endoderm3
tissue
brain92
liver621
adipose tissue2
skeletal muscle tissue2
omental fat pad1
primary cell
skeletal muscle myoblast1511
astrocyte of the cerebellum3
brain microvascular endothelial cell3
choroid plexus epithelial cell3
stem cell
hESC2
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