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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 243ChIP-seq
  • 11DNase-seq
  • 4RRBS
Assay category
  • 243DNA binding
  • 11DNA accessibility
  • 4DNA methylation
Target of assay
  • 98transcription factor
  • 93histone
  • 93histone modification
  • 52control
  • 49broad histone mark
  • 44narrow histone mark
  • 20RNA binding protein
  • 17chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 108November, 2017
  • 70August, 2017
  • 26December, 2017
  • 22February, 2018
  • 16November, 2018
  • 9October, 2017
  • 6September, 2017
  • 1January, 2019
Available data
  • 258fastq
  • 252bam
  • 209bigWig
  • 196bed narrowPeak
  • 144bigBed narrowPeak
  • 89bed broadPeak
  • 80bigBed broadPeak
  • 39tagAlign
  • 37bed bed3+
  • 4bed bedMethyl
  • 4bigBed bedMethyl
Organism
  • 251Homo sapiens
Biosample type
  • 113cell line
  • 57tissue
  • 44in vitro differentiated cells
  • 42primary cell
  • 2stem cell
Organ
  • 122liver
  • 52pancreas
  • 31epithelium
  • 20brain
  • 18embryo
  • vasculature
  • 4connective tissue
  • 3adipose tissue
  • 3blood vessel
  • 2musculature of body
  • 1blood
  • 1bodily fluid
  • 1spleen
Project
  • 258AMP
Genome assembly (visualization)
  • 220hg19
  • 186GRCh38
Lab
  • 258AMP-T2D consortium
Audit category:
  • 3inconsistent ontology term
Audit category:
  • 15missing controlled_by
Audit category:
  • 31inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
organ_slims!
  • vasculature
BIOSAMPLE
ASSAY

258 results

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Clear Filters
ChIP-seq
DNase-seq
RRBS
cell line
HepG2112
GM128781
tissue
islet of Langerhans18
brain92
pancreas10
liver621
adipose tissue2
in vitro differentiated cells
pancreatic endoderm15
primitive gut cell7
definitive endodermal cell5
Posterior foregut4
Hepatic endoderm3
primary cell
skeletal muscle myoblast1511
pancreatic alpha cell11
pancreatic beta cell11
astrocyte of the cerebellum3
stem cell
hESC2
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