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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 118ChIP-seq
  • 3DNase-seq
  • 1RRBS
Assay category
  • 118DNA binding
  • 3DNA accessibility
  • 1DNA methylation
Target of assay
  • 90transcription factor
  • 16RNA binding protein
  • 16chromatin remodeller
  • 16histone
  • 16histone modification
  • 12control
  • 8broad histone mark
  • 8narrow histone mark
  • 2other context
  • 2other post-translational modification
Date released
  • 105November, 2017
  • 10November, 2018
  • 4August, 2017
  • 3December, 2017
Available data
  • 122fastq
  • 120bam
  • 116bigWig
  • 106bed narrowPeak
  • 105bigBed narrowPeak
  • 57bed broadPeak
  • 57bigBed broadPeak
  • 12tagAlign
  • 4bed bed3+
  • 1bed bedMethyl
  • 1bigBed bedMethyl
Organism
  • 122Homo sapiens
Biosample type
  • 112cell line
  • 10tissue
Organ
  • 122liver
  • 52pancreas
  • 31epithelium
  • 20brain
  • 18embryo
  • 6vasculature
  • 4connective tissue
  • 3adipose tissue
  • 3blood vessel
  • 2musculature of body
  • 1blood
  • 1bodily fluid
  • 1spleen
Project
  • 122AMP
Genome assembly (visualization)
  • 117hg19
  • 90GRCh38
Lab
  • 122AMP-T2D consortium
Audit category:
  • 8missing controlled_by
Audit category:
  • 24inconsistent control read length
  • 8inconsistent control run_type
BIOSAMPLE
ASSAY

122 results

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Clear Filters
ChIP-seq
DNase-seq
RRBS
cell line
HepG2112
tissue
liver621
right lobe of liver1
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