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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 233ChIP-seq
  • 10DNase-seq
  • 4RRBS
Assay category
  • 233DNA binding
  • 10DNA accessibility
  • 4DNA methylation
Target of assay
  • 97transcription factor
  • 85histone
  • 85histone modification
  • 51control
  • 43broad histone mark
  • 42narrow histone mark
  • 21RNA binding protein
  • 17chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 114November, 2017
  • 59August, 2017
  • 23December, 2017
  • 22February, 2018
  • 15November, 2018
  • 9October, 2017
  • 4September, 2017
  • 1January, 2019
Available data
  • 247fastq
  • 241bam
  • 201bigWig
  • 187bed narrowPeak
  • 145bigBed narrowPeak
  • 92bed broadPeak
  • 83bigBed broadPeak
  • 39tagAlign
  • 23bed bed3+
  • 4bed bedMethyl
  • 4bigBed bedMethyl
Organism
  • 240Homo sapiens
Biosample type
  • 113cell line
  • 48primary cell
  • 44in vitro differentiated cells
  • 40tissue
  • 2stem cell
Organ
  • 117liver
  • 40pancreas
  • 31epithelium
  • 20brain
  • 18embryo
  • 6vasculature
  • 4connective tissue
  • 3adipose tissue
  • 3blood vessel
  • 2musculature of body
  • 1blood
  • 1bodily fluid
  • 1spleen
Project
  • 247AMP
Genome assembly (visualization)
  • 210hg19
  • 174GRCh38
Lab
  • 247AMP-T2D consortium
Audit category:
  • 3inconsistent ontology term
Audit category:
  • 13missing controlled_by
Audit category:
  • 31inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
replication_type!
  • anisogenic
BIOSAMPLE
ASSAY

247 results

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Clear Filters
ChIP-seq
DNase-seq
RRBS
cell line
HepG2112
GM128781
primary cell
skeletal muscle myoblast1511
pancreatic alpha cell11
pancreatic beta cell11
astrocyte of the cerebellum3
brain microvascular endothelial cell3
in vitro differentiated cells
pancreatic endoderm15
primitive gut cell7
definitive endodermal cell5
Posterior foregut4
Hepatic endoderm3
tissue
brain92
pancreas10
islet of Langerhans6
liver211
adipose tissue2
stem cell
hESC2
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