Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 102ChIP-seq
  • 9DNase-seq
Assay category
  • 102DNA binding
  • 9DNA accessibility
Target of assay
  • 56histone
  • 56histone modification
  • 38control
  • 30broad histone mark
  • 26narrow histone mark
  • 8transcription factor
  • 2RNA binding protein
Date released
  • 48August, 2017
  • 22February, 2018
  • 12December, 2017
  • 9November, 2018
  • 9October, 2017
  • 6September, 2017
  • 5November, 2017
Available data
  • 111fastq
  • 110bam
  • 76bigWig
  • 70bed narrowPeak
  • 27bigBed narrowPeak
  • 23bed bed3+
  • 18bed broadPeak
  • 15tagAlign
  • 9bigBed broadPeak
Organism
  • 104Homo sapiens
Biosample type
  • 54tissue
  • 31in vitro differentiated cells
  • 24primary cell
  • 2cell line
Organ
  • 51pancreas
  • 26epithelium
  • 15embryo
  • 14brain
  • 11liver
  • 3adipose tissue
  • 3connective tissue
  • 2vasculature
  • 1blood vessel
  • 1spleen
Project
  • 111AMP
Genome assembly (visualization)
  • 78hg19
  • 73GRCh38
Lab
  • 111AMP-T2D consortium
Audit category:
  • 3inconsistent ontology term
Audit category:
  • 7missing controlled_by
Audit category:
  • 2inconsistent control read length
  • 1inconsistent assembly
replication_type!
  • isogenic
BIOSAMPLE
ASSAY

111 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
DNase-seq
tissue
islet of Langerhans18
brain92
pancreas10
liver62
adipose tissue2
in vitro differentiated cells
pancreatic endoderm12
primitive gut cell4
Hepatic endoderm3
embryonic stem cell3
endocrine cell3
primary cell
pancreatic alpha cell11
pancreatic beta cell10
astrocyte of the cerebellum1
brain microvascular endothelial cell1
choroid plexus epithelial cell1
cell line
HepG22
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego