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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 163ChIP-seq
  • 4RRBS
  • 3DNase-seq
Assay category
  • 163DNA binding
  • 4DNA methylation
  • 3DNA accessibility
Target of assay
  • 95transcription factor
  • 49histone
  • 49histone modification
  • 25broad histone mark
  • 24narrow histone mark
  • 21RNA binding protein
  • 19control
  • 17chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 109November, 2017
  • 33August, 2017
  • 17December, 2017
  • 8November, 2018
  • 2September, 2017
  • 1January, 2019
Available data
  • 170fastq
  • 165bam
  • 153bigWig
  • 143bed narrowPeak
  • 124bigBed narrowPeak
  • 76bed broadPeak
  • 76bigBed broadPeak
  • 28bed bed3+
  • 24tagAlign
  • 4bed bedMethyl
  • 4bigBed bedMethyl
Organism
  • 170Homo sapiens
Biosample type
  • 111cell line
  • 24primary cell
  • 20tissue
  • 13in vitro differentiated cells
  • 2stem cell
Organ
  • 116liver
  • 13pancreas
  • 6brain
  • 5epithelium
  • 4vasculature
  • 3embryo
  • 2blood vessel
  • 2musculature of body
  • 1blood
  • 1bodily fluid
  • 1connective tissue
Project
  • 170AMP
Genome assembly (visualization)
  • 164hg19
  • 133GRCh38
Lab
  • 170AMP-T2D consortium
Audit category:
  • 10missing controlled_by
Audit category:
  • 29inconsistent control read length
  • 9inconsistent control run_type
  • 2inconsistent assembly
replication_type!
  • unreplicated
BIOSAMPLE
ASSAY

170 results

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Clear Filters
ChIP-seq
RRBS
DNase-seq
cell line
HepG2110
GM128781
primary cell
skeletal muscle myoblast1511
astrocyte of the cerebellum2
brain microvascular endothelial cell2
choroid plexus epithelial cell2
pancreatic beta cell1
tissue
islet of Langerhans12
liver411
skeletal muscle tissue2
in vitro differentiated cells
Posterior foregut3
definitive endodermal cell3
pancreatic endoderm3
primitive gut cell3
adipocyte1
stem cell
hESC2
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