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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 147ChIP-seq
  • 4RRBS
  • 2DNase-seq
Assay category
  • 147DNA binding
  • 4DNA methylation
  • 2DNA accessibility
Target of assay
  • 92transcription factor
  • 39histone
  • 39histone modification
  • 20RNA binding protein
  • 20narrow histone mark
  • 19broad histone mark
  • 17chromatin remodeller
  • 16control
  • 2other context
  • 2other post-translational modification
Date released
  • 109November, 2017
  • 22August, 2017
  • 14December, 2017
  • 7November, 2018
  • 1January, 2019
Available data
  • 153fastq
  • 148bam
  • 139bigWig
  • 130bed narrowPeak
  • 121bigBed narrowPeak
  • 75bed broadPeak
  • 75bigBed broadPeak
  • 24tagAlign
  • 14bed bed3+
  • 4bed bedMethyl
  • 4bigBed bedMethyl
Organism
  • 153Homo sapiens
Biosample type
  • 111cell line
  • 24primary cell
  • 13in vitro differentiated cells
  • 3tissue
  • 2stem cell
Organ
  • 111liver
  • 6brain
  • 5epithelium
  • 4vasculature
  • 3embryo
  • 2blood vessel
  • 2musculature of body
  • 1blood
  • 1bodily fluid
  • 1connective tissue
  • 1pancreas
Project
  • 153AMP
Genome assembly (visualization)
  • 148hg19
  • 117GRCh38
Lab
  • 153AMP-T2D consortium
Audit category:
  • 8missing controlled_by
Audit category:
  • 29inconsistent control read length
  • 9inconsistent control run_type
  • 2inconsistent assembly
BIOSAMPLE
ASSAY

153 results

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Clear Filters
ChIP-seq
RRBS
DNase-seq
cell line
HepG2110
GM128781
primary cell
skeletal muscle myoblast1511
astrocyte of the cerebellum2
brain microvascular endothelial cell2
choroid plexus epithelial cell2
pancreatic beta cell1
in vitro differentiated cells
Posterior foregut3
definitive endodermal cell3
pancreatic endoderm3
primitive gut cell3
adipocyte1
tissue
skeletal muscle tissue2
liver1
stem cell
hESC2
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