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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 86ChIP-seq
  • 8DNase-seq
Assay category
  • 86DNA binding
  • 8DNA accessibility
Target of assay
  • 46histone
  • 46histone modification
  • 35control
  • 24broad histone mark
  • 22narrow histone mark
  • 5transcription factor
  • 1RNA binding protein
Date released
  • 37August, 2017
  • 22February, 2018
  • 9December, 2017
  • 9October, 2017
  • 8November, 2018
  • 5November, 2017
  • 4September, 2017
Available data
  • 94fastq
  • 93bam
  • 62bigWig
  • 57bed narrowPeak
  • 24bigBed narrowPeak
  • 17bed broadPeak
  • 15tagAlign
  • 9bed bed3+
  • 8bigBed broadPeak
Organism
  • 87Homo sapiens
Biosample type
  • 37tissue
  • 31in vitro differentiated cells
  • 24primary cell
  • 2cell line
Organ
  • 39pancreas
  • 26epithelium
  • 15embryo
  • 14brain
  • 6liver
  • 3adipose tissue
  • 3connective tissue
  • 2vasculature
  • 1blood vessel
  • 1spleen
Project
  • 94AMP
Genome assembly (visualization)
  • 62hg19
  • 57GRCh38
Lab
  • 94AMP-T2D consortium
Audit category:
  • 3inconsistent ontology term
Audit category:
  • 5missing controlled_by
Audit category:
  • 2inconsistent control read length
  • 1inconsistent assembly
BIOSAMPLE
ASSAY

94 results

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Clear Filters
ChIP-seq
DNase-seq
tissue
brain92
pancreas10
islet of Langerhans6
liver21
adipose tissue2
in vitro differentiated cells
pancreatic endoderm12
primitive gut cell4
Hepatic endoderm3
embryonic stem cell3
endocrine cell3
primary cell
pancreatic alpha cell11
pancreatic beta cell10
astrocyte of the cerebellum1
brain microvascular endothelial cell1
choroid plexus epithelial cell1
cell line
HepG22
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