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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 227ChIP-seq
  • 11DNase-seq
  • 4RRBS
Assay category
  • 227DNA binding
  • 11DNA accessibility
  • 4DNA methylation
Target of assay
  • 100transcription factor
  • 95histone
  • 95histone modification
  • 54control
  • 49broad histone mark
  • 46narrow histone mark
  • RNA binding protein
  • 17chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 98November, 2017
  • 67August, 2017
  • 25December, 2017
  • 22February, 2018
  • 14November, 2018
  • 9October, 2017
  • 6September, 2017
  • 1January, 2019
Available data
  • 242fastq
  • 236bam
  • 193bigWig
  • 178bed narrowPeak
  • 127bigBed narrowPeak
  • 84bed broadPeak
  • 75bigBed broadPeak
  • 39tagAlign
  • 36bed bed3+
  • 4bed bedMethyl
  • 4bigBed bedMethyl
Organism
  • 235Homo sapiens
Biosample type
  • 98cell line
  • 55tissue
  • 44in vitro differentiated cells
  • 43primary cell
  • 2stem cell
Organ
  • 106liver
  • 51pancreas
  • 29epithelium
  • 18embryo
  • 17brain
  • 4connective tissue
  • 4vasculature
  • 3adipose tissue
  • 2blood vessel
  • 2musculature of body
  • 1blood
  • 1bodily fluid
  • 1spleen
Project
  • 242AMP
Genome assembly (visualization)
  • 204hg19
  • 171GRCh38
Lab
  • 242AMP-T2D consortium
Audit category:
  • 3inconsistent ontology term
Audit category:
  • 13missing controlled_by
Audit category:
  • 25inconsistent control read length
  • 6inconsistent control run_type
  • 3inconsistent assembly
target.investigated_as!
  • RNA binding protein
BIOSAMPLE
ASSAY

242 results

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Clear Filters
ChIP-seq
DNase-seq
RRBS
cell line
HepG297
GM128781
tissue
islet of Langerhans17
brain92
pancreas10
liver521
adipose tissue2
in vitro differentiated cells
pancreatic endoderm15
primitive gut cell7
definitive endodermal cell5
Posterior foregut4
Hepatic endoderm3
primary cell
skeletal muscle myoblast1311
pancreatic alpha cell11
pancreatic beta cell11
astrocyte of the cerebellum2
brain microvascular endothelial cell2
stem cell
hESC2
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