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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 200ChIP-seq
  • 11DNase-seq
  • 4RRBS
Assay category
  • 200DNA binding
  • 11DNA accessibility
  • 4DNA methylation
Target of assay
  • 100transcription factor
  • 95histone
  • 95histone modification
  • 54control
  • broad histone mark
  • 46narrow histone mark
  • 22RNA binding protein
  • 17chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 106November, 2017
  • 47August, 2017
  • 21December, 2017
  • 16November, 2018
  • 15February, 2018
  • 6September, 2017
  • 3October, 2017
  • 1January, 2019
Available data
  • 215fastq
  • 210bam
  • 167bigWig
  • 154bed narrowPeak
  • 125bigBed narrowPeak
  • 73bed broadPeak
  • 70bigBed broadPeak
  • 26bed bed3+
  • 17tagAlign
  • 4bed bedMethyl
  • 4bigBed bedMethyl
Organism
  • 212Homo sapiens
Biosample type
  • 105cell line
  • 40tissue
  • 36primary cell
  • 33in vitro differentiated cells
  • 1stem cell
Organ
  • 114liver
  • 35pancreas
  • 25epithelium
  • 14brain
  • 14embryo
  • 6vasculature
  • 4connective tissue
  • 3adipose tissue
  • 3blood vessel
  • 2musculature of body
  • 1blood
  • 1bodily fluid
  • 1spleen
Project
  • 215AMP
Genome assembly (visualization)
  • 178hg19
  • 143GRCh38
Lab
  • 215AMP-T2D consortium
Audit category:
  • 3inconsistent ontology term
Audit category:
  • 11missing controlled_by
Audit category:
  • 20inconsistent control read length
  • 9inconsistent control run_type
  • 1inconsistent assembly
target.investigated_as!
  • broad histone mark
BIOSAMPLE
ASSAY

215 results

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Clear Filters
ChIP-seq
DNase-seq
RRBS
cell line
HepG2104
GM128781
tissue
islet of Langerhans12
liver621
brain32
pancreas5
adipose tissue2
primary cell
skeletal muscle myoblast911
pancreatic alpha cell8
pancreatic beta cell8
astrocyte of the cerebellum3
brain microvascular endothelial cell3
in vitro differentiated cells
pancreatic endoderm11
primitive gut cell5
definitive endodermal cell4
Hepatic endoderm3
Posterior foregut3
stem cell
hESC1
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