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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 195ChIP-seq
  • 11DNase-seq
  • 4RRBS
Assay category
  • 195DNA binding
  • 11DNA accessibility
  • 4DNA methylation
Target of assay
  • 100transcription factor
  • 95histone
  • 95histone modification
  • control
  • 49broad histone mark
  • 46narrow histone mark
  • 22RNA binding protein
  • 17chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 101November, 2017
  • 53August, 2017
  • 19December, 2017
  • 16November, 2018
  • 14February, 2018
  • 7October, 2017
Available data
  • 210fastq
  • 204bam
  • 203bigWig
  • 200bed narrowPeak
  • 148bigBed narrowPeak
  • 93bed broadPeak
  • 84bigBed broadPeak
  • 35tagAlign
  • 30bed bed3+
  • 4bed bedMethyl
  • 4bigBed bedMethyl
Organism
  • 204Homo sapiens
Biosample type
  • 102cell line
  • 44tissue
  • 32primary cell
  • 31in vitro differentiated cells
  • 1stem cell
Organ
  • 110liver
  • 32pancreas
  • 16epithelium
  • 15brain
  • 13embryo
  • 4vasculature
  • 3connective tissue
  • 2adipose tissue
  • 2blood vessel
  • 2musculature of body
  • 1spleen
Project
  • 210AMP
Genome assembly (visualization)
  • 207hg19
  • 183GRCh38
Lab
  • 210AMP-T2D consortium
Audit category:
  • 2inconsistent ontology term
Audit category:
  • 15missing controlled_by
Audit category:
  • 31inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
target.investigated_as!
  • control
BIOSAMPLE
ASSAY

210 results

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Clear Filters
ChIP-seq
DNase-seq
RRBS
cell line
HepG2102
tissue
islet of Langerhans12
brain72
pancreas8
liver421
body of pancreas2
primary cell
skeletal muscle myoblast1411
pancreatic alpha cell5
pancreatic beta cell5
astrocyte of the cerebellum2
brain microvascular endothelial cell2
in vitro differentiated cells
pancreatic endoderm11
primitive gut cell5
Posterior foregut3
definitive endodermal cell3
Hepatic endoderm2
stem cell
hESC1
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