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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 154ChIP-seq
  • 11DNase-seq
  • 4RRBS
Assay category
  • 154DNA binding
  • 11DNA accessibility
  • 4DNA methylation
Target of assay
  • 100transcription factor
  • 95histone
  • histone modification
  • 54control
  • 49broad histone mark
  • 46narrow histone mark
  • 22RNA binding protein
  • 17chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 96November, 2017
  • 27August, 2017
  • 16November, 2018
  • 13December, 2017
  • 8February, 2018
  • 6September, 2017
  • 2October, 2017
  • 1January, 2019
Available data
  • 169fastq
  • 164bam
  • 122bigWig
  • 110bed narrowPeak
  • 104bigBed narrowPeak
  • 56bed broadPeak
  • 56bigBed broadPeak
  • 18bed bed3+
  • 4bed bedMethyl
  • 4bigBed bedMethyl
  • 4tagAlign
Organism
  • 168Homo sapiens
Biosample type
  • 98cell line
  • 29tissue
  • 23primary cell
  • 18in vitro differentiated cells
  • 1stem cell
Organ
  • 106liver
  • 23pancreas
  • 17epithelium
  • 10brain
  • 6embryo
  • 4vasculature
  • 3connective tissue
  • 2adipose tissue
  • 2blood vessel
  • 2musculature of body
  • 1blood
  • 1bodily fluid
  • 1spleen
Project
  • 169AMP
Genome assembly (visualization)
  • 133hg19
  • 99GRCh38
Lab
  • 169AMP-T2D consortium
Audit category:
  • 1inconsistent ontology term
Audit category:
  • 7missing controlled_by
Audit category:
  • 12inconsistent control read length
  • 8inconsistent control run_type
target.investigated_as!
  • histone modification
BIOSAMPLE
ASSAY

169 results

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Clear Filters
ChIP-seq
DNase-seq
RRBS
cell line
HepG297
GM128781
tissue
liver521
islet of Langerhans7
brain22
body of pancreas2
pancreas2
primary cell
pancreatic alpha cell6
pancreatic beta cell6
skeletal muscle myoblast311
astrocyte of the cerebellum2
brain microvascular endothelial cell2
in vitro differentiated cells
pancreatic endoderm5
definitive endodermal cell3
primitive gut cell3
Posterior foregut2
Hepatic endoderm1
stem cell
hESC1
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