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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 203ChIP-seq
  • 11DNase-seq
  • 4RRBS
Assay category
  • 203DNA binding
  • 11DNA accessibility
  • 4DNA methylation
Target of assay
  • 100transcription factor
  • 95histone
  • 95histone modification
  • 54control
  • 49broad histone mark
  • narrow histone mark
  • 22RNA binding protein
  • 17chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 104November, 2017
  • 50August, 2017
  • 18December, 2017
  • 16November, 2018
  • 15February, 2018
  • 8October, 2017
  • 6September, 2017
  • 1January, 2019
Available data
  • 218fastq
  • 212bam
  • 170bigWig
  • 156bed narrowPeak
  • 127bigBed narrowPeak
  • 76bed broadPeak
  • 70bigBed broadPeak
  • 29bed bed3+
  • 26tagAlign
  • 4bed bedMethyl
  • 4bigBed bedMethyl
Organism
  • 213Homo sapiens
Biosample type
  • 106cell line
  • 46tissue
  • 35primary cell
  • 29in vitro differentiated cells
  • 2stem cell
Organ
  • 114liver
  • 40pancreas
  • 23epithelium
  • 16brain
  • 10embryo
  • 4vasculature
  • 3connective tissue
  • 2adipose tissue
  • 2blood vessel
  • 2musculature of body
  • 1blood
  • 1bodily fluid
  • 1spleen
Project
  • 218AMP
Genome assembly (visualization)
  • 181hg19
  • 146GRCh38
Lab
  • 218AMP-T2D consortium
Audit category:
  • 1inconsistent ontology term
Audit category:
  • 11missing controlled_by
Audit category:
  • 23inconsistent control read length
  • 8inconsistent control run_type
  • 2inconsistent assembly
target.investigated_as!
  • narrow histone mark
BIOSAMPLE
ASSAY

218 results

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Clear Filters
ChIP-seq
DNase-seq
RRBS
cell line
HepG2105
GM128781
tissue
islet of Langerhans13
brain82
liver521
pancreas7
body of pancreas2
primary cell
skeletal muscle myoblast911
pancreatic alpha cell9
pancreatic beta cell9
astrocyte of the cerebellum2
brain microvascular endothelial cell2
in vitro differentiated cells
pancreatic endoderm9
primitive gut cell5
definitive endodermal cell4
Posterior foregut3
embryonic stem cell2
stem cell
hESC2
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