Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 149ChIP-seq
  • 11DNase-seq
  • 4RRBS
Assay category
  • 149DNA binding
  • 11DNA accessibility
  • 4DNA methylation
Target of assay
  • transcription factor
  • 95histone
  • 95histone modification
  • 54control
  • 49broad histone mark
  • 46narrow histone mark
  • 22RNA binding protein
  • 17chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 66August, 2017
  • 31November, 2017
  • 22February, 2018
  • 20December, 2017
  • 9November, 2018
  • 9October, 2017
  • 6September, 2017
  • 1January, 2019
Available data
  • 164fastq
  • 159bam
  • 116bigWig
  • 101bed narrowPeak
  • 55bigBed narrowPeak
  • 48bed broadPeak
  • 39bigBed broadPeak
  • 39tagAlign
  • 35bed bed3+
  • 4bed bedMethyl
  • 4bigBed bedMethyl
Organism
  • 157Homo sapiens
Biosample type
  • 53tissue
  • 43primary cell
  • 40in vitro differentiated cells
  • 26cell line
  • 2stem cell
Organ
  • 51pancreas
  • 32liver
  • 29epithelium
  • 17brain
  • 17embryo
  • 4connective tissue
  • 4vasculature
  • 3adipose tissue
  • 2blood vessel
  • 2musculature of body
  • 1blood
  • 1bodily fluid
  • 1spleen
Project
  • 164AMP
Genome assembly (visualization)
  • 127hg19
  • 108GRCh38
Lab
  • 164AMP-T2D consortium
Audit category:
  • 3inconsistent ontology term
Audit category:
  • 8missing controlled_by
Audit category:
  • 19inconsistent control read length
  • 3inconsistent assembly
  • 1inconsistent control run_type
target.investigated_as!
  • transcription factor
BIOSAMPLE
ASSAY

164 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
DNase-seq
RRBS
tissue
islet of Langerhans17
brain92
pancreas10
liver321
adipose tissue2
primary cell
skeletal muscle myoblast1311
pancreatic alpha cell11
pancreatic beta cell11
astrocyte of the cerebellum2
brain microvascular endothelial cell2
in vitro differentiated cells
pancreatic endoderm14
primitive gut cell6
definitive endodermal cell4
Hepatic endoderm3
Posterior foregut3
cell line
HepG225
GM128781
stem cell
hESC2
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego