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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 46ChIP-seq
Assay category
  • 46DNA binding
Target of assay
  • 100transcription factor
  • 95histone
  • 95histone modification
  • 54control
  • 49broad histone mark
  • 46narrow histone mark
  • 22RNA binding protein
  • 17chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 20August, 2017
  • 10November, 2017
  • 8December, 2017
  • 7February, 2018
  • 1October, 2017
Available data
  • 46bam
  • 46fastq
  • 45bigWig
  • 44bed narrowPeak
  • 21bigBed narrowPeak
  • 17bed broadPeak
  • 14bigBed broadPeak
  • 13tagAlign
  • 8bed bed3+
Organism
  • 44Homo sapiens
Biosample type
  • 15in vitro differentiated cells
  • 13primary cell
  • 11tissue
  • 7cell line
Organ
  • 12pancreas
  • 8embryo
  • 8epithelium
  • 8liver
  • 4brain
  • 2vasculature
  • 1adipose tissue
  • 1blood vessel
  • 1connective tissue
Project
  • 46AMP
Genome assembly (visualization)
  • 45hg19
  • 44GRCh38
Lab
  • 46AMP-T2D consortium
Audit category:
  • 2inconsistent ontology term
Audit category:
  • 4missing controlled_by
Audit category:
  • 8inconsistent control read length
  • 1inconsistent assembly
  • 1inconsistent control run_type
BIOSAMPLE
ASSAY

46 results

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ChIP-seq
in vitro differentiated cells
pancreatic endoderm6
Hepatic endoderm2
primitive gut cell2
Posterior foregut1
definitive endodermal cell1
primary cell
skeletal muscle myoblast6
pancreatic alpha cell2
pancreatic beta cell2
astrocyte of the cerebellum1
brain microvascular endothelial cell1
tissue
islet of Langerhans5
pancreas3
adipose tissue1
brain1
liver1
cell line
HepG27
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