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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 121ChIP-seq
  • 49ATAC-seq
  • 16snATAC-seq
  • 5GRO-seq
  • 5total RNA-seq
  • 1FAIRE-seq
  • 1Hi-C
  • 1single cell RNA-seq
Assay category
  • 121DNA binding
  • 66DNA accessibility
  • 6Transcription
  • 13D chromatin structure
Target of assay
  • 75transcription factor
  • 36control
  • 12recombinant protein
  • 10histone
  • 10histone modification
  • 7broad histone mark
  • 3chromatin remodeller
  • 3narrow histone mark
  • 1RNA binding protein
Date released
  • 52November, 2017
  • 43December, 2017
  • 39May, 2022
  • 21August, 2017
  • 16February, 2021
  • 9January, 2019
  • 5January, 2018
  • 5November, 2018
  • 5September, 2017
  • 1December, 2018
  • 1March, 2019
  • 1October, 2017
  • 1September, 2020
Available data
  • 159fastq
  • 137bam
  • 104bigWig
  • 87bed narrowPeak
  • 76bigBed narrowPeak
  • 40zippedFastqFolder
  • 6bed bed3+
  • 5bed broadPeak
  • 5tsv
  • 4bigBed broadPeak
Organism
  • 199Homo sapiens
Biosample type
  • 64primary cell
  • 62cell line
  • 57tissue
  • 14in vitro differentiated cells
  • 2stem cell
Organ
  • 104liver
  • 55pancreas
  • 48epithelium
  • 5connective tissue
  • 5embryo
  • 4blood
  • 4bodily fluid
  • 2adipose tissue
  • 1brain
Project
  • 143AMP
  • 56HPAP
Genome assembly (visualization)
  • 98hg19
  • 94GRCh38
  • 5hg18
Lab
  • 142AMP-T2D consortium
  • 56Klaus Kaestner, Upenn
  • 1Mark McCarthy, Oxford
Audit category:
  • 27inconsistent control
  • 16audit script error
  • 1inconsistent ontology term
Audit category:
  • 2missing controlled_by
Audit category:
  • 14inconsistent control read length
files.read_length!
  • 36
BIOSAMPLE
ASSAY

199 results

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Clear Filters
ChIP-seq
ATAC-seq
snATAC-seq
GRO-seq
total RNA-seq
FAIRE-seq
Hi-C
single cell RNA-seq
primary cell
pancreatic alpha cell25
Langerhans cell161
pancreatic beta cell16
pancreatic acinar cell6
cell line
HepG25251
GM128784
tissue
liver46
pancreas41
islet of Langerhans21
white adipose tissue2
cerebellum (Hemisphere)1
in vitro differentiated cells
pancreatic endoderm31
adipocyte3
Posterior foregut11
definitive endodermal cell11
primitive gut cell11
stem cell
hESC11
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