Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 126ChIP-seq
  • 49ATAC-seq
  • 5GRO-seq
  • 5total RNA-seq
  • 1FAIRE-seq
  • 1Hi-C
  • 1single cell RNA-seq
  • 1snATAC-seq
Assay category
  • 126DNA binding
  • 51DNA accessibility
  • 6Transcription
  • 13D chromatin structure
Target of assay
  • 73transcription factor
  • 38control
  • 15histone
  • 15histone modification
  • 12broad histone mark
  • 12recombinant protein
  • 3chromatin remodeller
  • 3narrow histone mark
  • 1RNA binding protein
Date released
  • 53November, 2017
  • 48December, 2017
  • 39May, 2022
  • 19August, 2017
  • 10January, 2019
  • 5January, 2018
  • 5November, 2018
  • 5September, 2017
  • 1December, 2018
  • 1February, 2021
  • 1March, 2019
  • 1October, 2017
  • 1September, 2020
Available data
  • 149fastq
  • 142bam
  • 108bigWig
  • 92bed narrowPeak
  • 76bigBed narrowPeak
  • 40zippedFastqFolder
  • 9bed bed3+
  • 5bed broadPeak
  • 5tsv
  • 4bigBed broadPeak
Organism
  • 189Homo sapiens
Biosample type
  • 64cell line
  • 55tissue
  • 49primary cell
  • 18in vitro differentiated cells
  • 3stem cell
Organ
  • 105liver
  • 55pancreas
  • 48epithelium
  • 6embryo
  • 5blood
  • 5bodily fluid
  • 3connective tissue
  • 1brain
Project
  • 148AMP
  • 41HPAP
Genome assembly (visualization)
  • 102hg19
  • 97GRCh38
  • 5hg18
Lab
  • 147AMP-T2D consortium
  • 41Klaus Kaestner, Upenn
  • 1Mark McCarthy, Oxford
Audit category:
  • 27inconsistent control
  • 1audit script error
  • 1inconsistent ontology term
Audit category:
  • 19inconsistent control read length
files.read_length!
  • 49
BIOSAMPLE
ASSAY

189 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
GRO-seq
total RNA-seq
FAIRE-seq
Hi-C
single cell RNA-seq
snATAC-seq
cell line
HepG25351
GM128785
tissue
liver46
pancreas41
islet of Langerhans21
cerebellum (Hemisphere)1
primary cell
pancreatic alpha cell25
pancreatic beta cell16
pancreatic acinar cell6
Langerhans cell11
in vitro differentiated cells
pancreatic endoderm41
Posterior foregut21
adipocyte3
definitive endodermal cell21
primitive gut cell21
stem cell
hESC21
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego