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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 128ChIP-seq
  • 5GRO-seq
  • 1ATAC-seq
  • 1FAIRE-seq
  • 1single cell RNA-seq
Assay category
  • 128DNA binding
  • 2DNA accessibility
  • 1Transcription
Target of assay
  • 75transcription factor
  • 38control
  • 15histone
  • 15histone modification
  • 12broad histone mark
  • 12recombinant protein
  • 3chromatin remodeller
  • 3narrow histone mark
  • 1RNA binding protein
Date released
  • 53November, 2017
  • 48December, 2017
  • 18August, 2017
  • 5January, 2018
  • 5January, 2019
  • 5November, 2018
  • 1October, 2017
  • 1September, 2020
Available data
  • 135fastq
  • 130bam
  • 97bigWig
  • 84bed narrowPeak
  • 68bigBed narrowPeak
  • 11bed bed3+
  • 4bed broadPeak
  • 4bigBed broadPeak
  • 1zippedFastqFolder
Organism
  • 136Homo sapiens
Biosample type
  • 58cell line
  • 56tissue
  • 18in vitro differentiated cells
  • 3stem cell
  • 1primary cell
Organ
  • 99liver
  • 7pancreas
  • 6embryo
  • 5blood
  • 5bodily fluid
  • 5connective tissue
  • 2adipose tissue
  • 1brain
  • 1epithelium
Project
  • 135AMP
  • 1HPAP
Genome assembly (visualization)
  • 91hg19
  • 86GRCh38
  • 5hg18
Lab
  • 135AMP-T2D consortium
  • 1Klaus Kaestner, Upenn
Audit category:
  • 27inconsistent control
  • 1inconsistent ontology term
Audit category:
  • 2missing controlled_by
Audit category:
  • 19inconsistent control read length
BIOSAMPLE
ASSAY

136 results

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Clear Filters
ChIP-seq
GRO-seq
ATAC-seq
FAIRE-seq
single cell RNA-seq
cell line
HepG253
GM128785
tissue
liver46
pancreas41
islet of Langerhans2
white adipose tissue2
cerebellum (Hemisphere)1
in vitro differentiated cells
pancreatic endoderm41
Posterior foregut21
adipocyte3
definitive endodermal cell21
primitive gut cell21
stem cell
hESC21
primary cell
Langerhans cell1
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