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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 110ChIP-seq
  • 46ATAC-seq
  • 16snATAC-seq
  • 5GRO-seq
  • 5total RNA-seq
  • 1FAIRE-seq
  • 1Hi-C
  • 1single cell RNA-seq
Assay category
  • 110DNA binding
  • 63DNA accessibility
  • 6Transcription
  • 13D chromatin structure
Target of assay
  • 69transcription factor
  • 35control
  • 12recombinant protein
  • 6histone
  • 6histone modification
  • 5broad histone mark
  • 3chromatin remodeller
  • 1RNA binding protein
  • 1narrow histone mark
Date released
  • 53November, 2017
  • 48December, 2017
  • 39May, 2022
  • August, 2017
  • 16February, 2021
  • 10January, 2019
  • 5January, 2018
  • 5November, 2018
  • 5September, 2017
  • 1December, 2018
  • 1March, 2019
  • 1October, 2017
  • 1September, 2020
Available data
  • 145fastq
  • 123bam
  • 92bigWig
  • 76bed narrowPeak
  • 65bigBed narrowPeak
  • 40zippedFastqFolder
  • 6bed bed3+
  • 5bed broadPeak
  • 5tsv
  • 4bigBed broadPeak
Organism
  • 185Homo sapiens
Biosample type
  • 64cell line
  • 61primary cell
  • 42tissue
  • 15in vitro differentiated cells
  • 3stem cell
Organ
  • 98liver
  • 46pancreas
  • 45epithelium
  • 6embryo
  • 5blood
  • 5bodily fluid
  • 1brain
Project
  • 129AMP
  • 56HPAP
Genome assembly (visualization)
  • 86hg19
  • 81GRCh38
  • 5hg18
Lab
  • 128AMP-T2D consortium
  • 56Klaus Kaestner, Upenn
  • 1Mark McCarthy, Oxford
Audit category:
  • 27inconsistent control
  • 16audit script error
  • 1inconsistent ontology term
Audit category:
  • 12inconsistent control read length
month_released!
  • August, 2017
BIOSAMPLE
ASSAY

185 results

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Clear Filters
ChIP-seq
ATAC-seq
snATAC-seq
GRO-seq
total RNA-seq
FAIRE-seq
Hi-C
single cell RNA-seq
cell line
HepG25351
GM128785
primary cell
pancreatic alpha cell24
Langerhans cell161
pancreatic beta cell15
pancreatic acinar cell5
tissue
liver39
cerebellum (Hemisphere)1
islet of Langerhans1
pancreas1
in vitro differentiated cells
pancreatic endoderm41
Posterior foregut21
definitive endodermal cell21
primitive gut cell21
Hepatic endoderm1
stem cell
hESC21
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